Hb_005511_090

Information

Type -
Description -
Location Contig5511: 74978-77429
Sequence    

Annotation

kegg
ID rcu:RCOM_0332780
description ubiquitin-conjugating enzyme E2 C, putative (EC:6.3.2.19)
nr
ID XP_012086494.1
description PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
swissprot
ID Q9LJZ5
description Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1
trembl
ID A0A067JP60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23942 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_090 0.0 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
2 Hb_012753_010 0.2116038582 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_000608_200 0.2430800944 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Pyrus x bretschneideri]
4 Hb_015978_050 0.2449363051 - - -
5 Hb_000054_110 0.2630151666 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
6 Hb_005731_150 0.2633544826 - - PREDICTED: uncharacterized protein LOC105630360 [Jatropha curcas]
7 Hb_000236_450 0.2722250554 - - coated vesicle membrane protein, putative [Ricinus communis]
8 Hb_001188_120 0.2735152938 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
9 Hb_003197_060 0.2742116569 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
10 Hb_003097_050 0.2781733545 - - hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
11 Hb_003805_070 0.2815614379 - - PREDICTED: sacsin [Jatropha curcas]
12 Hb_000964_070 0.2832511094 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
13 Hb_012338_030 0.2917376787 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_146339_010 0.2927413038 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
15 Hb_004984_080 0.2933484272 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
16 Hb_085083_020 0.2951051294 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
17 Hb_012098_190 0.2954416736 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_167977_010 0.2984921877 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
19 Hb_003349_100 0.301033851 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000404_040 0.3020397803 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005511_090 Hb_005511_090 Hb_012753_010 Hb_012753_010 Hb_005511_090--Hb_012753_010 Hb_000608_200 Hb_000608_200 Hb_005511_090--Hb_000608_200 Hb_015978_050 Hb_015978_050 Hb_005511_090--Hb_015978_050 Hb_000054_110 Hb_000054_110 Hb_005511_090--Hb_000054_110 Hb_005731_150 Hb_005731_150 Hb_005511_090--Hb_005731_150 Hb_000236_450 Hb_000236_450 Hb_005511_090--Hb_000236_450 Hb_012753_010--Hb_000054_110 Hb_185058_020 Hb_185058_020 Hb_012753_010--Hb_185058_020 Hb_001188_120 Hb_001188_120 Hb_012753_010--Hb_001188_120 Hb_012753_010--Hb_005731_150 Hb_021854_020 Hb_021854_020 Hb_012753_010--Hb_021854_020 Hb_048626_010 Hb_048626_010 Hb_000608_200--Hb_048626_010 Hb_023755_010 Hb_023755_010 Hb_000608_200--Hb_023755_010 Hb_031421_010 Hb_031421_010 Hb_000608_200--Hb_031421_010 Hb_000883_030 Hb_000883_030 Hb_000608_200--Hb_000883_030 Hb_002875_050 Hb_002875_050 Hb_000608_200--Hb_002875_050 Hb_015978_050--Hb_000236_450 Hb_016734_030 Hb_016734_030 Hb_015978_050--Hb_016734_030 Hb_001496_080 Hb_001496_080 Hb_015978_050--Hb_001496_080 Hb_032258_010 Hb_032258_010 Hb_015978_050--Hb_032258_010 Hb_001341_020 Hb_001341_020 Hb_015978_050--Hb_001341_020 Hb_003097_050 Hb_003097_050 Hb_000054_110--Hb_003097_050 Hb_005214_080 Hb_005214_080 Hb_000054_110--Hb_005214_080 Hb_001780_130 Hb_001780_130 Hb_000054_110--Hb_001780_130 Hb_000054_110--Hb_005731_150 Hb_001096_020 Hb_001096_020 Hb_000054_110--Hb_001096_020 Hb_005731_150--Hb_005214_080 Hb_000649_180 Hb_000649_180 Hb_005731_150--Hb_000649_180 Hb_005731_150--Hb_003097_050 Hb_005731_150--Hb_001780_130 Hb_011616_020 Hb_011616_020 Hb_000236_450--Hb_011616_020 Hb_008123_010 Hb_008123_010 Hb_000236_450--Hb_008123_010 Hb_031658_040 Hb_031658_040 Hb_000236_450--Hb_031658_040 Hb_002518_120 Hb_002518_120 Hb_000236_450--Hb_002518_120 Hb_003805_070 Hb_003805_070 Hb_000236_450--Hb_003805_070 Hb_002368_070 Hb_002368_070 Hb_000236_450--Hb_002368_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.230629 0.127614 0.116564 0.725727 0.11156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0591397 0.530677 0.864335 1.177

CAGE analysis