Hb_005511_100

Information

Type -
Description -
Location Contig5511: 79728-84486
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22750g
description POPTRDRAFT_659854, POPTRDRAFT_724954; hypothetical protein
nr
ID XP_012086491.1
description PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
swissprot
ID Q7XTV7
description Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2
trembl
ID B9HU55
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22750g PE=4 SV=2
Gene Ontology
ID GO:0046872
description probable e3 ubiquitin-protein ligase hip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48271: 81609-83219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_100 0.0 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
2 Hb_007441_210 0.1364932157 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
3 Hb_009486_150 0.1366056263 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
4 Hb_007229_070 0.1367037792 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
5 Hb_000565_030 0.1510602563 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
6 Hb_007558_010 0.1517147569 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
7 Hb_017469_020 0.1530391257 - - -
8 Hb_000157_090 0.1543875804 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
9 Hb_013405_060 0.1552495315 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
10 Hb_000268_010 0.157575907 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000742_140 0.1589905832 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002112_020 0.1593988339 - - 60S ribosomal protein L9, putative [Ricinus communis]
13 Hb_001902_130 0.160678748 - - 60S ribosomal protein L36-2 [Morus notabilis]
14 Hb_001369_660 0.1622757086 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
15 Hb_064264_010 0.1627163642 - - hypothetical protein [Zea mays]
16 Hb_001946_210 0.1654047982 - - ribosomal protein l7ae, putative [Ricinus communis]
17 Hb_027295_010 0.1662257818 - - 40S ribosomal protein S7, putative [Ricinus communis]
18 Hb_042083_050 0.1662941269 - - 60S ribosomal protein L11, putative [Ricinus communis]
19 Hb_003297_010 0.1671285675 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
20 Hb_021419_020 0.1689602498 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005511_100 Hb_005511_100 Hb_007441_210 Hb_007441_210 Hb_005511_100--Hb_007441_210 Hb_009486_150 Hb_009486_150 Hb_005511_100--Hb_009486_150 Hb_007229_070 Hb_007229_070 Hb_005511_100--Hb_007229_070 Hb_000565_030 Hb_000565_030 Hb_005511_100--Hb_000565_030 Hb_007558_010 Hb_007558_010 Hb_005511_100--Hb_007558_010 Hb_017469_020 Hb_017469_020 Hb_005511_100--Hb_017469_020 Hb_013405_060 Hb_013405_060 Hb_007441_210--Hb_013405_060 Hb_028841_030 Hb_028841_030 Hb_007441_210--Hb_028841_030 Hb_004363_010 Hb_004363_010 Hb_007441_210--Hb_004363_010 Hb_021419_020 Hb_021419_020 Hb_007441_210--Hb_021419_020 Hb_000742_140 Hb_000742_140 Hb_007441_210--Hb_000742_140 Hb_000084_290 Hb_000084_290 Hb_007441_210--Hb_000084_290 Hb_175215_010 Hb_175215_010 Hb_009486_150--Hb_175215_010 Hb_004052_020 Hb_004052_020 Hb_009486_150--Hb_004052_020 Hb_009486_150--Hb_021419_020 Hb_009486_150--Hb_000565_030 Hb_002301_130 Hb_002301_130 Hb_009486_150--Hb_002301_130 Hb_009486_150--Hb_007441_210 Hb_001269_320 Hb_001269_320 Hb_007229_070--Hb_001269_320 Hb_001369_660 Hb_001369_660 Hb_007229_070--Hb_001369_660 Hb_004440_050 Hb_004440_050 Hb_007229_070--Hb_004440_050 Hb_011828_050 Hb_011828_050 Hb_007229_070--Hb_011828_050 Hb_000157_030 Hb_000157_030 Hb_007229_070--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_007229_070--Hb_003266_050 Hb_000157_090 Hb_000157_090 Hb_000565_030--Hb_000157_090 Hb_000565_030--Hb_004052_020 Hb_002742_050 Hb_002742_050 Hb_000565_030--Hb_002742_050 Hb_012573_070 Hb_012573_070 Hb_000565_030--Hb_012573_070 Hb_001314_100 Hb_001314_100 Hb_000565_030--Hb_001314_100 Hb_001951_260 Hb_001951_260 Hb_007558_010--Hb_001951_260 Hb_005535_050 Hb_005535_050 Hb_007558_010--Hb_005535_050 Hb_001504_070 Hb_001504_070 Hb_007558_010--Hb_001504_070 Hb_007558_010--Hb_011828_050 Hb_007558_010--Hb_007441_210 Hb_019962_030 Hb_019962_030 Hb_007558_010--Hb_019962_030 Hb_000395_290 Hb_000395_290 Hb_017469_020--Hb_000395_290 Hb_000000_160 Hb_000000_160 Hb_017469_020--Hb_000000_160 Hb_002868_010 Hb_002868_010 Hb_017469_020--Hb_002868_010 Hb_000649_320 Hb_000649_320 Hb_017469_020--Hb_000649_320 Hb_002007_060 Hb_002007_060 Hb_017469_020--Hb_002007_060 Hb_001898_230 Hb_001898_230 Hb_017469_020--Hb_001898_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34429 0.921311 0.995875 0.475973 0.611494 2.08982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04902 2.5629 0.204824 0.328988 0.228154

CAGE analysis