Hb_005511_130

Information

Type -
Description -
Location Contig5511: 100925-106908
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22770g
description POPTRDRAFT_659857; hypothetical protein
nr
ID XP_011040972.1
description PREDICTED: transmembrane protein 115-like [Populus euphratica]
swissprot
ID Q12893
description Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1
trembl
ID B9HUD8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22770g PE=4 SV=2
Gene Ontology
ID GO:0005794
description transmembrane protein 115

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48277: 100931-106805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_130 0.0 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
2 Hb_004730_020 0.0693290521 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
3 Hb_003687_080 0.0869436556 - - PREDICTED: casein kinase I-like [Jatropha curcas]
4 Hb_000032_410 0.0875342731 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
5 Hb_000984_220 0.0936524879 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
6 Hb_000915_130 0.09371733 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
7 Hb_005357_110 0.0944870871 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
8 Hb_029253_010 0.0971116032 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
9 Hb_003740_020 0.0985481429 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_006925_050 0.0992356958 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
11 Hb_074399_010 0.100781495 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
12 Hb_000800_020 0.1025162713 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
13 Hb_003964_080 0.1035832491 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
14 Hb_029584_120 0.1036446129 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
15 Hb_000260_490 0.1045293729 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
16 Hb_001160_110 0.1076335587 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
17 Hb_000001_090 0.1079352293 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
18 Hb_001579_300 0.1098793045 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
19 Hb_002900_150 0.1101120972 - - PREDICTED: syntaxin-81 [Jatropha curcas]
20 Hb_002942_230 0.1115467285 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]

Gene co-expression network

sample Hb_005511_130 Hb_005511_130 Hb_004730_020 Hb_004730_020 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_000032_410 Hb_000032_410 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005357_110 Hb_005357_110 Hb_005511_130--Hb_005357_110 Hb_001579_300 Hb_001579_300 Hb_004730_020--Hb_001579_300 Hb_004730_020--Hb_000032_410 Hb_004730_020--Hb_005357_110 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_003740_020 Hb_003740_020 Hb_004730_020--Hb_003740_020 Hb_001160_110 Hb_001160_110 Hb_003687_080--Hb_001160_110 Hb_000327_330 Hb_000327_330 Hb_003687_080--Hb_000327_330 Hb_074399_010 Hb_074399_010 Hb_003687_080--Hb_074399_010 Hb_000001_090 Hb_000001_090 Hb_003687_080--Hb_000001_090 Hb_000318_220 Hb_000318_220 Hb_003687_080--Hb_000318_220 Hb_000032_410--Hb_005357_110 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_000984_220--Hb_004730_020 Hb_000800_020 Hb_000800_020 Hb_000984_220--Hb_000800_020 Hb_000984_220--Hb_001160_110 Hb_000984_220--Hb_003687_080 Hb_004158_050 Hb_004158_050 Hb_000984_220--Hb_004158_050 Hb_000915_130--Hb_005357_110 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_000915_130--Hb_004730_020 Hb_005357_110--Hb_029253_010 Hb_005357_110--Hb_003740_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62873 8.98741 31.5507 31.1201 5.65269 4.94498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58518 4.87922 4.42923 6.2591 14.6719

CAGE analysis