Hb_005513_020

Information

Type -
Description -
Location Contig5513: 51883-54401
Sequence    

Annotation

kegg
ID rcu:RCOM_1576600
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_012087443.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9RI65
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1576600 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48288: 51886-52027 , PASA_asmbl_48289: 52767-53091
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005513_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
2 Hb_000175_200 0.1372316201 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003119_130 0.1394986362 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
4 Hb_003453_060 0.1419286417 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
5 Hb_002030_090 0.1438828847 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
6 Hb_001172_150 0.1487359602 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
7 Hb_000212_270 0.150327644 - - calreticulin, putative [Ricinus communis]
8 Hb_000252_240 0.1520758844 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X2 [Gossypium raimondii]
9 Hb_002025_290 0.1555465637 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
10 Hb_078582_010 0.159360056 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
11 Hb_008878_020 0.1594894727 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
12 Hb_000697_020 0.1622118563 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
13 Hb_000042_090 0.1650962242 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
14 Hb_005575_010 0.1650998197 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
15 Hb_001898_100 0.1658138555 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
16 Hb_001544_060 0.1666326954 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB4 isoform X2 [Jatropha curcas]
17 Hb_061126_010 0.1670714164 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
18 Hb_000265_170 0.1687703593 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
19 Hb_001285_020 0.1691572602 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_003337_020 0.173578206 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]

Gene co-expression network

sample Hb_005513_020 Hb_005513_020 Hb_000175_200 Hb_000175_200 Hb_005513_020--Hb_000175_200 Hb_003119_130 Hb_003119_130 Hb_005513_020--Hb_003119_130 Hb_003453_060 Hb_003453_060 Hb_005513_020--Hb_003453_060 Hb_002030_090 Hb_002030_090 Hb_005513_020--Hb_002030_090 Hb_001172_150 Hb_001172_150 Hb_005513_020--Hb_001172_150 Hb_000212_270 Hb_000212_270 Hb_005513_020--Hb_000212_270 Hb_000175_200--Hb_000212_270 Hb_000175_200--Hb_003119_130 Hb_000345_400 Hb_000345_400 Hb_000175_200--Hb_000345_400 Hb_001898_100 Hb_001898_100 Hb_000175_200--Hb_001898_100 Hb_001638_190 Hb_001638_190 Hb_000175_200--Hb_001638_190 Hb_004102_080 Hb_004102_080 Hb_000175_200--Hb_004102_080 Hb_078582_010 Hb_078582_010 Hb_003119_130--Hb_078582_010 Hb_016687_010 Hb_016687_010 Hb_003119_130--Hb_016687_010 Hb_003119_130--Hb_003453_060 Hb_003119_130--Hb_001172_150 Hb_005575_010 Hb_005575_010 Hb_003119_130--Hb_005575_010 Hb_003453_060--Hb_005575_010 Hb_003453_060--Hb_078582_010 Hb_002025_290 Hb_002025_290 Hb_003453_060--Hb_002025_290 Hb_003043_130 Hb_003043_130 Hb_003453_060--Hb_003043_130 Hb_001544_060 Hb_001544_060 Hb_003453_060--Hb_001544_060 Hb_008878_020 Hb_008878_020 Hb_002030_090--Hb_008878_020 Hb_093364_010 Hb_093364_010 Hb_002030_090--Hb_093364_010 Hb_001579_060 Hb_001579_060 Hb_002030_090--Hb_001579_060 Hb_000987_020 Hb_000987_020 Hb_002030_090--Hb_000987_020 Hb_000037_200 Hb_000037_200 Hb_002030_090--Hb_000037_200 Hb_029095_010 Hb_029095_010 Hb_002030_090--Hb_029095_010 Hb_000697_020 Hb_000697_020 Hb_001172_150--Hb_000697_020 Hb_001172_150--Hb_008878_020 Hb_001172_150--Hb_000212_270 Hb_061126_010 Hb_061126_010 Hb_001172_150--Hb_061126_010 Hb_000705_010 Hb_000705_010 Hb_001172_150--Hb_000705_010 Hb_000212_270--Hb_008878_020 Hb_000212_270--Hb_000697_020 Hb_000212_270--Hb_001898_100 Hb_000212_270--Hb_003119_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0984008 0.428136 0.0733743 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0398146 0 0 0.0933845 0.365291

CAGE analysis