Hb_005517_010

Information

Type -
Description -
Location Contig5517: 741-5586
Sequence    

Annotation

kegg
ID rcu:RCOM_1622040
description Chorismate mutase, chloroplast precursor, putative (EC:5.4.99.5)
nr
ID XP_002512128.1
description Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9C544
description Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana GN=CM3 PE=1 SV=1
trembl
ID B9RCY0
description Chorismate mutase, chloroplast, putative OS=Ricinus communis GN=RCOM_1622040 PE=4 SV=1
Gene Ontology
ID GO:0003824
description chorismate mutase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005517_010 0.0 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
2 Hb_012107_070 0.1564526474 - - -
3 Hb_036693_010 0.177650786 - - -
4 Hb_001916_060 0.1829031795 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
5 Hb_005155_020 0.1909463071 - - -
6 Hb_061466_020 0.1946440126 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_000997_010 0.2028811516 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
8 Hb_054436_010 0.2075606217 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
9 Hb_006230_040 0.2250040687 - - kinase, putative [Ricinus communis]
10 Hb_014361_050 0.2254000898 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
11 Hb_101020_010 0.2318158141 - - -
12 Hb_001195_150 0.2341651243 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
13 Hb_055339_010 0.2357227918 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
14 Hb_000189_430 0.241405879 - - unnamed protein product [Vitis vinifera]
15 Hb_000169_190 0.241425613 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
16 Hb_000160_150 0.2440982256 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
17 Hb_004570_050 0.2448442854 - - kinase, putative [Ricinus communis]
18 Hb_007223_010 0.249319276 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007603_020 0.251347017 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
20 Hb_033926_010 0.2514366094 - - -

Gene co-expression network

sample Hb_005517_010 Hb_005517_010 Hb_012107_070 Hb_012107_070 Hb_005517_010--Hb_012107_070 Hb_036693_010 Hb_036693_010 Hb_005517_010--Hb_036693_010 Hb_001916_060 Hb_001916_060 Hb_005517_010--Hb_001916_060 Hb_005155_020 Hb_005155_020 Hb_005517_010--Hb_005155_020 Hb_061466_020 Hb_061466_020 Hb_005517_010--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_005517_010--Hb_000997_010 Hb_012107_070--Hb_036693_010 Hb_028848_030 Hb_028848_030 Hb_012107_070--Hb_028848_030 Hb_012107_070--Hb_005155_020 Hb_012107_070--Hb_061466_020 Hb_000214_090 Hb_000214_090 Hb_012107_070--Hb_000214_090 Hb_036693_010--Hb_005155_020 Hb_000169_190 Hb_000169_190 Hb_036693_010--Hb_000169_190 Hb_000099_090 Hb_000099_090 Hb_036693_010--Hb_000099_090 Hb_012184_050 Hb_012184_050 Hb_036693_010--Hb_012184_050 Hb_101020_010 Hb_101020_010 Hb_001916_060--Hb_101020_010 Hb_114984_010 Hb_114984_010 Hb_001916_060--Hb_114984_010 Hb_001195_150 Hb_001195_150 Hb_001916_060--Hb_001195_150 Hb_128376_010 Hb_128376_010 Hb_001916_060--Hb_128376_010 Hb_001935_190 Hb_001935_190 Hb_001916_060--Hb_001935_190 Hb_005155_020--Hb_000169_190 Hb_005155_020--Hb_000099_090 Hb_004570_050 Hb_004570_050 Hb_005155_020--Hb_004570_050 Hb_005155_020--Hb_012184_050 Hb_015928_020 Hb_015928_020 Hb_061466_020--Hb_015928_020 Hb_061466_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_061466_020--Hb_014361_050 Hb_167508_010 Hb_167508_010 Hb_061466_020--Hb_167508_010 Hb_129459_010 Hb_129459_010 Hb_061466_020--Hb_129459_010 Hb_000997_010--Hb_014361_050 Hb_076233_020 Hb_076233_020 Hb_000997_010--Hb_076233_020 Hb_055339_010 Hb_055339_010 Hb_000997_010--Hb_055339_010 Hb_000997_010--Hb_015928_020 Hb_000997_010--Hb_004570_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82865 2.20588 2.31242 0.766076 2.42451 2.30713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0490439 0.119933

CAGE analysis