Hb_005523_010

Information

Type transcription factor
Description TF Family: PHD
Location Contig5523: 15121-28686
Sequence    

Annotation

kegg
ID vvi:100258707
description helicase protein MOM1
nr
ID XP_012064622.1
description PREDICTED: helicase protein MOM1-like [Jatropha curcas]
swissprot
ID Q9M658
description Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1
trembl
ID A0A067LAQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22912 PE=4 SV=1
Gene Ontology
ID GO:0005515
description helicase protein mom1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48298: 14484-16415 , PASA_asmbl_48299: 22214-23197 , PASA_asmbl_48300: 24466-28621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005523_010 0.0 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
2 Hb_011616_020 0.1074561046 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
3 Hb_005250_030 0.1157149747 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
4 Hb_010757_030 0.1158345775 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_002986_070 0.1174086504 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
6 Hb_000529_140 0.1214283573 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013459_010 0.1227505318 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
8 Hb_007545_130 0.1229996485 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
9 Hb_030131_030 0.1233082815 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
10 Hb_003805_070 0.131666711 - - PREDICTED: sacsin [Jatropha curcas]
11 Hb_001408_120 0.1329518212 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_001341_010 0.1363867292 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
13 Hb_099270_030 0.1379272686 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
14 Hb_008511_140 0.1393425767 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632314 [Jatropha curcas]
15 Hb_000186_080 0.1396109437 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
16 Hb_000404_040 0.1440903447 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002631_250 0.1446345824 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
18 Hb_003089_020 0.1470275335 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
19 Hb_006846_080 0.1477241129 - - calnexin, putative [Ricinus communis]
20 Hb_002016_050 0.1477947969 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005523_010 Hb_005523_010 Hb_011616_020 Hb_011616_020 Hb_005523_010--Hb_011616_020 Hb_005250_030 Hb_005250_030 Hb_005523_010--Hb_005250_030 Hb_010757_030 Hb_010757_030 Hb_005523_010--Hb_010757_030 Hb_002986_070 Hb_002986_070 Hb_005523_010--Hb_002986_070 Hb_000529_140 Hb_000529_140 Hb_005523_010--Hb_000529_140 Hb_013459_010 Hb_013459_010 Hb_005523_010--Hb_013459_010 Hb_011616_020--Hb_005250_030 Hb_000062_450 Hb_000062_450 Hb_011616_020--Hb_000062_450 Hb_156279_010 Hb_156279_010 Hb_011616_020--Hb_156279_010 Hb_003632_030 Hb_003632_030 Hb_011616_020--Hb_003632_030 Hb_000815_170 Hb_000815_170 Hb_011616_020--Hb_000815_170 Hb_007545_130 Hb_007545_130 Hb_005250_030--Hb_007545_130 Hb_005250_030--Hb_000815_170 Hb_005250_030--Hb_013459_010 Hb_006618_050 Hb_006618_050 Hb_005250_030--Hb_006618_050 Hb_005250_030--Hb_156279_010 Hb_003506_050 Hb_003506_050 Hb_005250_030--Hb_003506_050 Hb_000069_490 Hb_000069_490 Hb_010757_030--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_010757_030--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_010757_030--Hb_028707_110 Hb_006846_080 Hb_006846_080 Hb_010757_030--Hb_006846_080 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_016760_010 Hb_016760_010 Hb_010757_030--Hb_016760_010 Hb_002016_050 Hb_002016_050 Hb_002986_070--Hb_002016_050 Hb_002986_070--Hb_007545_130 Hb_015778_060 Hb_015778_060 Hb_002986_070--Hb_015778_060 Hb_000186_080 Hb_000186_080 Hb_002986_070--Hb_000186_080 Hb_002986_070--Hb_013459_010 Hb_008511_140 Hb_008511_140 Hb_000529_140--Hb_008511_140 Hb_000390_030 Hb_000390_030 Hb_000529_140--Hb_000390_030 Hb_000529_140--Hb_010757_030 Hb_000495_080 Hb_000495_080 Hb_000529_140--Hb_000495_080 Hb_000640_260 Hb_000640_260 Hb_000529_140--Hb_000640_260 Hb_013459_010--Hb_007545_130 Hb_000925_090 Hb_000925_090 Hb_013459_010--Hb_000925_090 Hb_135572_010 Hb_135572_010 Hb_013459_010--Hb_135572_010 Hb_000714_040 Hb_000714_040 Hb_013459_010--Hb_000714_040 Hb_013459_010--Hb_000815_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28186 2.55477 1.42305 1.62392 1.50396 2.41896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.46045 0.393874 1.69601 2.99433 8.61779

CAGE analysis