Hb_005523_020

Information

Type -
Description -
Location Contig5523: 38636-44955
Sequence    

Annotation

kegg
ID pop:POPTR_0005s01360g
description MORPHEUS MOLECULE family protein
nr
ID XP_006382355.1
description MORPHEUS MOLECULE family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GFF8
description MORPHEUS MOLECULE family protein OS=Populus trichocarpa GN=POPTR_0005s01360g PE=4 SV=1
Gene Ontology
ID GO:0043167
description helicase protein mom1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48302: 41515-44451 , PASA_asmbl_48303: 41515-44451
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005523_020 0.0 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
2 Hb_000205_260 0.0327607593 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
3 Hb_007044_110 0.0512165626 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000457_230 0.0539343302 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
5 Hb_001636_050 0.0657892845 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
6 Hb_001231_090 0.0665737192 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_007305_020 0.0720073341 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
8 Hb_000836_410 0.0740325776 - - sec10, putative [Ricinus communis]
9 Hb_004976_010 0.0745462894 - - hypothetical protein RCOM_1429110 [Ricinus communis]
10 Hb_007283_010 0.0746528195 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
11 Hb_005288_070 0.0749037555 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
12 Hb_000500_300 0.0759987151 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
13 Hb_008059_010 0.0763475869 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
14 Hb_001534_210 0.0775982012 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
15 Hb_000115_280 0.0781278476 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
16 Hb_011972_020 0.0789758439 - - protein binding protein, putative [Ricinus communis]
17 Hb_000579_010 0.0789884005 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
18 Hb_055235_020 0.0792728822 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
19 Hb_000243_210 0.0795140359 - - protein with unknown function [Ricinus communis]
20 Hb_000445_060 0.0797316915 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_005523_020 Hb_005523_020 Hb_000205_260 Hb_000205_260 Hb_005523_020--Hb_000205_260 Hb_007044_110 Hb_007044_110 Hb_005523_020--Hb_007044_110 Hb_000457_230 Hb_000457_230 Hb_005523_020--Hb_000457_230 Hb_001636_050 Hb_001636_050 Hb_005523_020--Hb_001636_050 Hb_001231_090 Hb_001231_090 Hb_005523_020--Hb_001231_090 Hb_007305_020 Hb_007305_020 Hb_005523_020--Hb_007305_020 Hb_000205_260--Hb_007044_110 Hb_000205_260--Hb_000457_230 Hb_005288_070 Hb_005288_070 Hb_000205_260--Hb_005288_070 Hb_000205_260--Hb_007305_020 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010 Hb_007044_110--Hb_000457_230 Hb_055235_020 Hb_055235_020 Hb_007044_110--Hb_055235_020 Hb_007044_110--Hb_001636_050 Hb_004976_010 Hb_004976_010 Hb_007044_110--Hb_004976_010 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_001636_050--Hb_055235_020 Hb_002542_130 Hb_002542_130 Hb_001231_090--Hb_002542_130 Hb_002282_060 Hb_002282_060 Hb_001231_090--Hb_002282_060 Hb_001231_090--Hb_004976_010 Hb_001534_210 Hb_001534_210 Hb_001231_090--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001231_090--Hb_004032_230 Hb_000086_150 Hb_000086_150 Hb_007305_020--Hb_000086_150 Hb_002571_030 Hb_002571_030 Hb_007305_020--Hb_002571_030 Hb_007305_020--Hb_055235_020 Hb_007305_020--Hb_007044_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1991 16.5603 15.8892 7.34286 11.9271 10.7506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09478 6.50294 5.9396 7.62909 14.8865

CAGE analysis