Hb_005523_030

Information

Type -
Description -
Location Contig5523: 49338-53233
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa004043mg
description hypothetical protein
nr
ID XP_012070727.1
description PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
swissprot
ID Q9FH36
description Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1
trembl
ID A0A067L3G0
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_00802 PE=3 SV=1
Gene Ontology
ID GO:0047262
description probable galacturonosyltransferase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005523_030 0.0 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
2 Hb_000086_490 0.0276064406 - - cellulose synthase [Populus tomentosa]
3 Hb_015807_090 0.0400725615 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
4 Hb_001051_060 0.04569531 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
5 Hb_005686_040 0.0465550024 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000776_090 0.0478589753 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
7 Hb_002078_180 0.055671732 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
8 Hb_042083_010 0.0591645351 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
9 Hb_000836_640 0.0594211393 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
10 Hb_000328_030 0.0595982042 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
11 Hb_000193_320 0.0636424262 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003747_160 0.0654009828 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001935_060 0.0661133512 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
14 Hb_012633_020 0.0667934185 - - laccase, putative [Ricinus communis]
15 Hb_010166_010 0.0706791917 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
16 Hb_050514_030 0.0720083881 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
17 Hb_001189_080 0.0730178265 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001377_220 0.0735191033 - - dopamine beta-monooxygenase, putative [Ricinus communis]
19 Hb_009476_080 0.0742160499 - - BnaA03g18920D [Brassica napus]
20 Hb_006065_030 0.0753505668 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005523_030 Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_005523_030--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_005523_030--Hb_015807_090 Hb_001051_060 Hb_001051_060 Hb_005523_030--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_005523_030--Hb_005686_040 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_002078_180 Hb_002078_180 Hb_005523_030--Hb_002078_180 Hb_000086_490--Hb_015807_090 Hb_000086_490--Hb_005686_040 Hb_000086_490--Hb_001051_060 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_000086_490--Hb_002078_180 Hb_003747_160 Hb_003747_160 Hb_015807_090--Hb_003747_160 Hb_015807_090--Hb_002078_180 Hb_015807_090--Hb_001051_060 Hb_015807_090--Hb_005686_040 Hb_001051_060--Hb_005686_040 Hb_001051_060--Hb_003747_160 Hb_001051_060--Hb_002078_180 Hb_005686_040--Hb_002078_180 Hb_002835_360 Hb_002835_360 Hb_005686_040--Hb_002835_360 Hb_000836_640 Hb_000836_640 Hb_000776_090--Hb_000836_640 Hb_000776_090--Hb_000086_490 Hb_002739_140 Hb_002739_140 Hb_000776_090--Hb_002739_140 Hb_050514_030 Hb_050514_030 Hb_000776_090--Hb_050514_030 Hb_000162_010 Hb_000162_010 Hb_000776_090--Hb_000162_010 Hb_002078_180--Hb_002835_360 Hb_009476_080 Hb_009476_080 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00933349 3.56139 3.23726 64.2293 0.0367745 0.035681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0424082 0.133475 0 0.238835 40.4377

CAGE analysis