Hb_005527_030

Information

Type -
Description -
Location Contig5527: 26132-27609
Sequence    

Annotation

kegg
ID rcu:RCOM_1614490
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012083448.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
swissprot
ID Q9M2A1
description Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2
trembl
ID A0A067K0T9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14439 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at3g42630

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48310: 26427-26692 , PASA_asmbl_48312: 26947-28123
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005527_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
2 Hb_008595_010 0.1009433786 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
3 Hb_000347_570 0.1061513066 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
4 Hb_000170_190 0.107109728 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
5 Hb_011512_060 0.111538505 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
6 Hb_000037_110 0.1143797636 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
7 Hb_000010_180 0.1165428564 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
8 Hb_023278_010 0.1201507535 - - Chaperone protein DnaJ [Glycine soja]
9 Hb_000768_190 0.1215691169 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
10 Hb_000011_210 0.1238272141 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
11 Hb_004635_080 0.1239960448 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_006445_010 0.1257880227 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
13 Hb_000441_180 0.1282916361 - - Early endosome antigen, putative [Ricinus communis]
14 Hb_000714_050 0.1287652418 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
15 Hb_000504_150 0.1291388326 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
16 Hb_001300_070 0.1307279418 - - OTU domain-containing protein 6B, putative [Ricinus communis]
17 Hb_000866_470 0.1333744881 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
18 Hb_002749_110 0.1354038249 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
19 Hb_000057_050 0.1354481302 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
20 Hb_000025_650 0.1355641836 - - exosome complex exonuclease rrp45, putative [Ricinus communis]

Gene co-expression network

sample Hb_005527_030 Hb_005527_030 Hb_008595_010 Hb_008595_010 Hb_005527_030--Hb_008595_010 Hb_000347_570 Hb_000347_570 Hb_005527_030--Hb_000347_570 Hb_000170_190 Hb_000170_190 Hb_005527_030--Hb_000170_190 Hb_011512_060 Hb_011512_060 Hb_005527_030--Hb_011512_060 Hb_000037_110 Hb_000037_110 Hb_005527_030--Hb_000037_110 Hb_000010_180 Hb_000010_180 Hb_005527_030--Hb_000010_180 Hb_001300_070 Hb_001300_070 Hb_008595_010--Hb_001300_070 Hb_000768_190 Hb_000768_190 Hb_008595_010--Hb_000768_190 Hb_000059_150 Hb_000059_150 Hb_008595_010--Hb_000059_150 Hb_002587_020 Hb_002587_020 Hb_008595_010--Hb_002587_020 Hb_010381_060 Hb_010381_060 Hb_008595_010--Hb_010381_060 Hb_008595_010--Hb_000037_110 Hb_001178_150 Hb_001178_150 Hb_000347_570--Hb_001178_150 Hb_009151_020 Hb_009151_020 Hb_000347_570--Hb_009151_020 Hb_001473_090 Hb_001473_090 Hb_000347_570--Hb_001473_090 Hb_020665_030 Hb_020665_030 Hb_000347_570--Hb_020665_030 Hb_000025_650 Hb_000025_650 Hb_000347_570--Hb_000025_650 Hb_001417_050 Hb_001417_050 Hb_000347_570--Hb_001417_050 Hb_002601_130 Hb_002601_130 Hb_000170_190--Hb_002601_130 Hb_002276_060 Hb_002276_060 Hb_000170_190--Hb_002276_060 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000170_190--Hb_000010_180 Hb_008489_020 Hb_008489_020 Hb_000170_190--Hb_008489_020 Hb_000170_190--Hb_000768_190 Hb_009558_040 Hb_009558_040 Hb_011512_060--Hb_009558_040 Hb_000856_140 Hb_000856_140 Hb_011512_060--Hb_000856_140 Hb_000714_050 Hb_000714_050 Hb_011512_060--Hb_000714_050 Hb_010315_090 Hb_010315_090 Hb_011512_060--Hb_010315_090 Hb_011512_060--Hb_008595_010 Hb_006449_050 Hb_006449_050 Hb_011512_060--Hb_006449_050 Hb_000037_110--Hb_000768_190 Hb_000021_040 Hb_000021_040 Hb_000037_110--Hb_000021_040 Hb_022250_110 Hb_022250_110 Hb_000037_110--Hb_022250_110 Hb_000029_320 Hb_000029_320 Hb_000037_110--Hb_000029_320 Hb_002070_070 Hb_002070_070 Hb_000037_110--Hb_002070_070 Hb_003544_100 Hb_003544_100 Hb_000010_180--Hb_003544_100 Hb_015884_030 Hb_015884_030 Hb_000010_180--Hb_015884_030 Hb_006915_060 Hb_006915_060 Hb_000010_180--Hb_006915_060 Hb_000010_180--Hb_006449_050 Hb_000010_180--Hb_000768_190 Hb_002909_050 Hb_002909_050 Hb_000010_180--Hb_002909_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5169 3.70665 3.04442 2.24287 12.9417 9.84278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.92508 2.30103 1.7404 3.29756 7.2027

CAGE analysis