Hb_005527_050

Information

Type -
Description -
Location Contig5527: 32422-35806
Sequence    

Annotation

kegg
ID rcu:RCOM_1614510
description hypothetical protein
nr
ID XP_012083445.1
description PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14437 PE=4 SV=1
Gene Ontology
ID GO:0005747
description PREDICTED: uncharacterized protein LOC105643024

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48313: 28693-31941 , PASA_asmbl_48314: 32327-35799
cDNA
(Sanger)
(ID:Location)		 029_A22.ab1: 32332-35700

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005527_050 0.0 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
2 Hb_003728_020 0.0540395113 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003453_020 0.0658373743 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
4 Hb_002272_250 0.0672009445 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_005928_060 0.0735492664 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
6 Hb_000905_190 0.0738807628 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
7 Hb_150069_020 0.0761423447 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
8 Hb_002249_140 0.0763365664 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
9 Hb_000017_120 0.0772190326 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
10 Hb_000538_020 0.078077203 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
11 Hb_004722_060 0.0792884875 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
12 Hb_004096_170 0.0816205216 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
13 Hb_012305_070 0.0816778978 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000107_390 0.0817787043 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
15 Hb_143629_010 0.0822326521 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
16 Hb_168918_020 0.0828095329 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_000417_180 0.0828958971 - - 60S ribosomal protein L11, putative [Ricinus communis]
18 Hb_000322_050 0.0831630531 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
19 Hb_028639_060 0.0832382188 - - transporter, putative [Ricinus communis]
20 Hb_001214_130 0.0843047916 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]

Gene co-expression network

sample Hb_005527_050 Hb_005527_050 Hb_003728_020 Hb_003728_020 Hb_005527_050--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_005527_050--Hb_003453_020 Hb_002272_250 Hb_002272_250 Hb_005527_050--Hb_002272_250 Hb_005928_060 Hb_005928_060 Hb_005527_050--Hb_005928_060 Hb_000905_190 Hb_000905_190 Hb_005527_050--Hb_000905_190 Hb_150069_020 Hb_150069_020 Hb_005527_050--Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_002272_250--Hb_000032_570 Hb_011794_090 Hb_011794_090 Hb_002272_250--Hb_011794_090 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_000017_120 Hb_000017_120 Hb_002272_250--Hb_000017_120 Hb_002272_250--Hb_150069_020 Hb_005928_060--Hb_000905_190 Hb_001214_130 Hb_001214_130 Hb_005928_060--Hb_001214_130 Hb_000019_230 Hb_000019_230 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_000997_020 Hb_000997_020 Hb_005928_060--Hb_000997_020 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_002997_170 Hb_002997_170 Hb_000905_190--Hb_002997_170 Hb_000905_190--Hb_001214_130 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140 Hb_076787_010 Hb_076787_010 Hb_150069_020--Hb_076787_010 Hb_150069_020--Hb_003453_020 Hb_002249_140 Hb_002249_140 Hb_150069_020--Hb_002249_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
230.051 69.9092 57.6341 35.1937 264.622 194.812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
183.704 176.057 134.357 74.4215 34.24

CAGE analysis