Hb_005527_080

Information

Type -
Description -
Location Contig5527: 52316-53977
Sequence    

Annotation

kegg
ID cic:CICLE_v10023951mg
description hypothetical protein
nr
ID XP_006445105.1
description hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
swissprot
ID Q28960
description Carbonyl reductase [NADPH] 1 OS=Sus scrofa GN=CBR1 PE=1 SV=3
trembl
ID V4U2R4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023951mg PE=4 SV=1
Gene Ontology
ID GO:0016616
description (+)-neomenthol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005527_080 0.0 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
2 Hb_000260_140 0.1558268401 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
3 Hb_149838_010 0.157793714 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
4 Hb_002783_020 0.1647123551 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
5 Hb_002708_020 0.1923616048 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
6 Hb_054436_010 0.1924893909 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
7 Hb_027402_090 0.1961068089 - - endonuclease, putative [Ricinus communis]
8 Hb_007594_100 0.1975768693 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
9 Hb_000160_150 0.2004131392 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
10 Hb_000265_220 0.2217859243 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
11 Hb_114984_010 0.2233391682 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003177_010 0.223703617 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
13 Hb_000169_190 0.2275572643 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
14 Hb_012184_050 0.2283564242 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
15 Hb_006915_020 0.2293435087 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
16 Hb_000003_150 0.2300180992 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
17 Hb_063409_020 0.2348145746 - - Calcium-binding protein, putative [Ricinus communis]
18 Hb_101020_010 0.2359186308 - - -
19 Hb_007456_010 0.2370875467 - - hypothetical protein L484_003540 [Morus notabilis]
20 Hb_002831_040 0.237164648 - - PREDICTED: fatty acid amide hydrolase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005527_080 Hb_005527_080 Hb_000260_140 Hb_000260_140 Hb_005527_080--Hb_000260_140 Hb_149838_010 Hb_149838_010 Hb_005527_080--Hb_149838_010 Hb_002783_020 Hb_002783_020 Hb_005527_080--Hb_002783_020 Hb_002708_020 Hb_002708_020 Hb_005527_080--Hb_002708_020 Hb_054436_010 Hb_054436_010 Hb_005527_080--Hb_054436_010 Hb_027402_090 Hb_027402_090 Hb_005527_080--Hb_027402_090 Hb_000260_140--Hb_002783_020 Hb_000260_140--Hb_149838_010 Hb_000260_140--Hb_002708_020 Hb_004176_060 Hb_004176_060 Hb_000260_140--Hb_004176_060 Hb_000160_150 Hb_000160_150 Hb_000260_140--Hb_000160_150 Hb_149838_010--Hb_002783_020 Hb_149838_010--Hb_027402_090 Hb_149838_010--Hb_002708_020 Hb_000265_220 Hb_000265_220 Hb_149838_010--Hb_000265_220 Hb_002686_330 Hb_002686_330 Hb_149838_010--Hb_002686_330 Hb_002783_020--Hb_027402_090 Hb_002783_020--Hb_002708_020 Hb_002783_020--Hb_002686_330 Hb_002783_020--Hb_004176_060 Hb_002708_020--Hb_000160_150 Hb_002708_020--Hb_002686_330 Hb_008246_030 Hb_008246_030 Hb_002708_020--Hb_008246_030 Hb_002708_020--Hb_027402_090 Hb_002307_350 Hb_002307_350 Hb_002708_020--Hb_002307_350 Hb_005408_020 Hb_005408_020 Hb_002708_020--Hb_005408_020 Hb_054436_010--Hb_149838_010 Hb_114984_010 Hb_114984_010 Hb_054436_010--Hb_114984_010 Hb_005517_010 Hb_005517_010 Hb_054436_010--Hb_005517_010 Hb_054436_010--Hb_002783_020 Hb_004657_090 Hb_004657_090 Hb_054436_010--Hb_004657_090 Hb_027402_090--Hb_000265_220 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_000169_190 Hb_000169_190 Hb_027402_090--Hb_000169_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22639 0.362766 1.87847 0.626926 2.01872 1.50434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.493106 0 0 0.217567 0.234315

CAGE analysis