Hb_005529_020

Information

Type -
Description -
Location Contig5529: 29812-32092
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12480g
description xyloglucan endotransglucosylase/hydrolase protein 32 precursor
nr
ID XP_012082446.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
swissprot
ID Q9SJL9
description Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1
trembl
ID A0A067KA64
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_16564 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48325: 29902-30044 , PASA_asmbl_48326: 30332-31933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005529_020 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
2 Hb_001195_670 0.1577648504 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
3 Hb_000450_170 0.1779540559 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001186_110 0.1792150243 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
5 Hb_014720_100 0.1809520928 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
6 Hb_003001_050 0.1902171461 - - hypothetical protein RCOM_1749890 [Ricinus communis]
7 Hb_006538_160 0.2066508764 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001248_120 0.2114957332 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001922_030 0.2124412844 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
10 Hb_001616_010 0.2154285702 - - hypothetical protein RCOM_1749890 [Ricinus communis]
11 Hb_048384_010 0.2157394985 - - PREDICTED: probable receptor-like protein kinase At2g42960 [Cucumis sativus]
12 Hb_000617_300 0.2165281103 - - RALFL33, putative [Ricinus communis]
13 Hb_004125_070 0.2181597909 - - Glycolipid transfer protein, putative [Ricinus communis]
14 Hb_000015_140 0.2212384461 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
15 Hb_002686_260 0.2222155952 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
16 Hb_002900_180 0.2230726826 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
17 Hb_003536_090 0.2272787612 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_178968_040 0.2281771824 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004925_030 0.2281938064 - - EXORDIUM like 1 [Theobroma cacao]
20 Hb_000054_010 0.2287267461 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005529_020 Hb_005529_020 Hb_001195_670 Hb_001195_670 Hb_005529_020--Hb_001195_670 Hb_000450_170 Hb_000450_170 Hb_005529_020--Hb_000450_170 Hb_001186_110 Hb_001186_110 Hb_005529_020--Hb_001186_110 Hb_014720_100 Hb_014720_100 Hb_005529_020--Hb_014720_100 Hb_003001_050 Hb_003001_050 Hb_005529_020--Hb_003001_050 Hb_006538_160 Hb_006538_160 Hb_005529_020--Hb_006538_160 Hb_001195_670--Hb_000450_170 Hb_000028_620 Hb_000028_620 Hb_001195_670--Hb_000028_620 Hb_001195_670--Hb_003001_050 Hb_000015_140 Hb_000015_140 Hb_001195_670--Hb_000015_140 Hb_066207_020 Hb_066207_020 Hb_001195_670--Hb_066207_020 Hb_000320_030 Hb_000320_030 Hb_000450_170--Hb_000320_030 Hb_000313_280 Hb_000313_280 Hb_000450_170--Hb_000313_280 Hb_000450_170--Hb_000015_140 Hb_002894_070 Hb_002894_070 Hb_000450_170--Hb_002894_070 Hb_000054_010 Hb_000054_010 Hb_001186_110--Hb_000054_010 Hb_001186_110--Hb_003001_050 Hb_000455_070 Hb_000455_070 Hb_001186_110--Hb_000455_070 Hb_002203_020 Hb_002203_020 Hb_001186_110--Hb_002203_020 Hb_000300_420 Hb_000300_420 Hb_001186_110--Hb_000300_420 Hb_174541_030 Hb_174541_030 Hb_001186_110--Hb_174541_030 Hb_178968_040 Hb_178968_040 Hb_014720_100--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_014720_100--Hb_017002_010 Hb_008695_220 Hb_008695_220 Hb_014720_100--Hb_008695_220 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010 Hb_000015_190 Hb_000015_190 Hb_003001_050--Hb_000015_190 Hb_001616_010 Hb_001616_010 Hb_003001_050--Hb_001616_010 Hb_000561_040 Hb_000561_040 Hb_003001_050--Hb_000561_040 Hb_002616_020 Hb_002616_020 Hb_003001_050--Hb_002616_020 Hb_001616_100 Hb_001616_100 Hb_003001_050--Hb_001616_100 Hb_006538_160--Hb_000450_170 Hb_000000_300 Hb_000000_300 Hb_006538_160--Hb_000000_300 Hb_006538_160--Hb_002894_070 Hb_001269_100 Hb_001269_100 Hb_006538_160--Hb_001269_100 Hb_003536_090 Hb_003536_090 Hb_006538_160--Hb_003536_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06336 0.345851 1.89723 25.395 0.0551934 0.178643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6501 0.778888 0.82768 4.20001 1.62612

CAGE analysis