Hb_005532_060

Information

Type -
Description -
Location Contig5532: 23817-25424
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa004015mg
description hypothetical protein
nr
ID XP_012067748.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
swissprot
ID Q9SIL5
description Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
trembl
ID M5XCC5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004015mg PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at2g20540-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48339: 24247-24414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005532_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
2 Hb_000457_150 0.0675577974 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
3 Hb_178968_110 0.0681462836 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
4 Hb_055062_030 0.0759221462 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
5 Hb_003266_130 0.0836639971 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
6 Hb_000223_150 0.0841024948 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
7 Hb_005488_010 0.0854888677 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004951_040 0.0870916016 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
9 Hb_008453_090 0.0885988914 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
10 Hb_008695_210 0.0893016192 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
11 Hb_000059_220 0.0904270446 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
12 Hb_000614_230 0.0905527508 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
13 Hb_006846_110 0.0919557849 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
14 Hb_010172_050 0.0923891846 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
15 Hb_000997_400 0.0934099401 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
16 Hb_000193_290 0.0969896913 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
17 Hb_007416_270 0.097594645 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
18 Hb_007747_200 0.0991375143 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
19 Hb_004324_370 0.099288014 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
20 Hb_000022_250 0.1007790578 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]

Gene co-expression network

sample Hb_005532_060 Hb_005532_060 Hb_000457_150 Hb_000457_150 Hb_005532_060--Hb_000457_150 Hb_178968_110 Hb_178968_110 Hb_005532_060--Hb_178968_110 Hb_055062_030 Hb_055062_030 Hb_005532_060--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_005532_060--Hb_003266_130 Hb_000223_150 Hb_000223_150 Hb_005532_060--Hb_000223_150 Hb_005488_010 Hb_005488_010 Hb_005532_060--Hb_005488_010 Hb_000457_150--Hb_178968_110 Hb_000297_200 Hb_000297_200 Hb_000457_150--Hb_000297_200 Hb_000457_150--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_000457_150--Hb_000997_400 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_178968_110--Hb_003266_130 Hb_000179_210 Hb_000179_210 Hb_178968_110--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_178968_110--Hb_000614_230 Hb_010172_050 Hb_010172_050 Hb_178968_110--Hb_010172_050 Hb_016065_010 Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_008289_060 Hb_008289_060 Hb_055062_030--Hb_008289_060 Hb_055062_030--Hb_000567_260 Hb_008453_090 Hb_008453_090 Hb_055062_030--Hb_008453_090 Hb_003266_130--Hb_000614_230 Hb_006816_140 Hb_006816_140 Hb_003266_130--Hb_006816_140 Hb_003266_130--Hb_005488_010 Hb_001158_140 Hb_001158_140 Hb_003266_130--Hb_001158_140 Hb_003266_130--Hb_010172_050 Hb_000223_150--Hb_005488_010 Hb_000223_150--Hb_008289_060 Hb_006846_110 Hb_006846_110 Hb_000223_150--Hb_006846_110 Hb_004951_040 Hb_004951_040 Hb_000223_150--Hb_004951_040 Hb_131864_040 Hb_131864_040 Hb_000223_150--Hb_131864_040 Hb_005488_010--Hb_016065_010 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_005488_010--Hb_008289_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35629 3.26024 1.40717 1.13223 3.92916 5.78793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.22913 8.23607 11.4535 1.97252 2.95113

CAGE analysis