Hb_005532_080

Information

Type -
Description -
Location Contig5532: 40686-43080
Sequence    

Annotation

kegg
ID rcu:RCOM_1621600
description Heparanase precursor, putative
nr
ID XP_012068345.1
description PREDICTED: heparanase-like protein 2 [Jatropha curcas]
swissprot
ID Q8L608
description Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1
trembl
ID B9RCW6
description Heparanase, putative OS=Ricinus communis GN=RCOM_1621600 PE=4 SV=1
Gene Ontology
ID GO:0016020
description heparanase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005532_080 0.0 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
2 Hb_068804_190 0.0213043569 - - kinase, putative [Ricinus communis]
3 Hb_166360_010 0.0244276717 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
4 Hb_011549_040 0.0448549568 - - -
5 Hb_007382_110 0.0510392464 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
6 Hb_056506_040 0.0565829411 - - -
7 Hb_162450_010 0.056990776 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
8 Hb_000111_490 0.0667012254 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004218_270 0.0690692787 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
10 Hb_024723_010 0.0701245791 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
11 Hb_049955_010 0.0718543217 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
12 Hb_093084_030 0.0737892969 - - oleosin2 [Plukenetia volubilis]
13 Hb_000933_030 0.0743056485 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
14 Hb_185608_010 0.0817643793 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
15 Hb_010577_020 0.0831167333 - - -
16 Hb_000057_090 0.0868184911 - - hypothetical protein RCOM_1494490 [Ricinus communis]
17 Hb_011689_010 0.0893106859 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
18 Hb_000343_070 0.0905557292 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
19 Hb_000326_120 0.0934651367 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
20 Hb_000707_090 0.0943377879 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]

Gene co-expression network

sample Hb_005532_080 Hb_005532_080 Hb_068804_190 Hb_068804_190 Hb_005532_080--Hb_068804_190 Hb_166360_010 Hb_166360_010 Hb_005532_080--Hb_166360_010 Hb_011549_040 Hb_011549_040 Hb_005532_080--Hb_011549_040 Hb_007382_110 Hb_007382_110 Hb_005532_080--Hb_007382_110 Hb_056506_040 Hb_056506_040 Hb_005532_080--Hb_056506_040 Hb_162450_010 Hb_162450_010 Hb_005532_080--Hb_162450_010 Hb_068804_190--Hb_166360_010 Hb_068804_190--Hb_011549_040 Hb_068804_190--Hb_056506_040 Hb_000111_490 Hb_000111_490 Hb_068804_190--Hb_000111_490 Hb_010577_020 Hb_010577_020 Hb_068804_190--Hb_010577_020 Hb_166360_010--Hb_011549_040 Hb_166360_010--Hb_162450_010 Hb_004218_270 Hb_004218_270 Hb_166360_010--Hb_004218_270 Hb_000933_030 Hb_000933_030 Hb_166360_010--Hb_000933_030 Hb_011549_040--Hb_000933_030 Hb_011549_040--Hb_056506_040 Hb_011549_040--Hb_010577_020 Hb_142204_010 Hb_142204_010 Hb_007382_110--Hb_142204_010 Hb_000707_090 Hb_000707_090 Hb_007382_110--Hb_000707_090 Hb_185608_010 Hb_185608_010 Hb_007382_110--Hb_185608_010 Hb_000557_080 Hb_000557_080 Hb_007382_110--Hb_000557_080 Hb_007382_110--Hb_166360_010 Hb_056506_040--Hb_000111_490 Hb_056506_040--Hb_010577_020 Hb_024723_010 Hb_024723_010 Hb_056506_040--Hb_024723_010 Hb_162450_010--Hb_004218_270 Hb_093084_030 Hb_093084_030 Hb_162450_010--Hb_093084_030 Hb_057862_010 Hb_057862_010 Hb_162450_010--Hb_057862_010 Hb_162450_010--Hb_185608_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.030588 0.086202 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0488016

CAGE analysis