Hb_005534_030

Information

Type -
Description -
Location Contig5534: 53277-57145
Sequence    

Annotation

kegg
ID rcu:RCOM_1228950
description S-locus-specific glycoprotein S6 precursor, putative
nr
ID KDP38975.1
description hypothetical protein JCGZ_00732 [Jatropha curcas]
swissprot
ID O81832
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4
trembl
ID A0A067L398
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00732 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48343: 53136-57181 , PASA_asmbl_48344: 53314-57181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005534_030 0.0 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
2 Hb_005529_030 0.1673230883 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
3 Hb_001307_040 0.1752174711 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
4 Hb_008092_050 0.1858068991 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
5 Hb_005271_160 0.202881667 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
6 Hb_054865_060 0.2071930334 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
7 Hb_006911_070 0.2128280108 - - 50S ribosomal protein L1p, putative [Ricinus communis]
8 Hb_015531_030 0.2212533253 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001959_240 0.223212395 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_000260_590 0.2245003837 - - electron transporter, putative [Ricinus communis]
11 Hb_001213_040 0.2296780843 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
12 Hb_000997_100 0.2336242824 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
13 Hb_008092_060 0.2362863806 - - -
14 Hb_004542_020 0.2372814231 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
15 Hb_003900_030 0.2386408446 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
16 Hb_000395_090 0.2392441937 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
17 Hb_005618_150 0.2397064917 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
18 Hb_000538_260 0.2406153205 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
19 Hb_001408_030 0.2407648693 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
20 Hb_005038_030 0.2411625906 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005534_030 Hb_005534_030 Hb_005529_030 Hb_005529_030 Hb_005534_030--Hb_005529_030 Hb_001307_040 Hb_001307_040 Hb_005534_030--Hb_001307_040 Hb_008092_050 Hb_008092_050 Hb_005534_030--Hb_008092_050 Hb_005271_160 Hb_005271_160 Hb_005534_030--Hb_005271_160 Hb_054865_060 Hb_054865_060 Hb_005534_030--Hb_054865_060 Hb_006911_070 Hb_006911_070 Hb_005534_030--Hb_006911_070 Hb_005529_030--Hb_054865_060 Hb_005529_030--Hb_001307_040 Hb_003900_030 Hb_003900_030 Hb_005529_030--Hb_003900_030 Hb_002027_090 Hb_002027_090 Hb_005529_030--Hb_002027_090 Hb_005529_030--Hb_005271_160 Hb_001307_040--Hb_008092_050 Hb_008092_060 Hb_008092_060 Hb_001307_040--Hb_008092_060 Hb_001307_040--Hb_005271_160 Hb_001408_030 Hb_001408_030 Hb_001307_040--Hb_001408_030 Hb_001307_040--Hb_003900_030 Hb_000395_090 Hb_000395_090 Hb_001307_040--Hb_000395_090 Hb_008092_050--Hb_001408_030 Hb_008092_050--Hb_008092_060 Hb_005618_150 Hb_005618_150 Hb_008092_050--Hb_005618_150 Hb_001437_120 Hb_001437_120 Hb_008092_050--Hb_001437_120 Hb_008092_050--Hb_006911_070 Hb_008206_060 Hb_008206_060 Hb_005271_160--Hb_008206_060 Hb_065525_130 Hb_065525_130 Hb_005271_160--Hb_065525_130 Hb_005271_160--Hb_008092_050 Hb_005271_160--Hb_003900_030 Hb_012098_150 Hb_012098_150 Hb_005271_160--Hb_012098_150 Hb_001959_240 Hb_001959_240 Hb_005271_160--Hb_001959_240 Hb_054865_060--Hb_002027_090 Hb_054865_060--Hb_005271_160 Hb_048141_030 Hb_048141_030 Hb_054865_060--Hb_048141_030 Hb_137276_010 Hb_137276_010 Hb_054865_060--Hb_137276_010 Hb_004738_110 Hb_004738_110 Hb_054865_060--Hb_004738_110 Hb_001907_070 Hb_001907_070 Hb_006911_070--Hb_001907_070 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_006911_070--Hb_001959_240 Hb_031042_060 Hb_031042_060 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_006911_070--Hb_005618_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.80376 2.15337 5.8227 2.26849 4.45718 2.59067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.224811 0.123821 0 0.232226 9.30928

CAGE analysis