Hb_005535_050

Information

Type -
Description -
Location Contig5535: 22091-24079
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09170g
description POPTRDRAFT_819185; succinate dehydrogenase subunit 4 family protein
nr
ID XP_012087999.1
description PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8W487
description Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=2 SV=1
trembl
ID A0A067JKX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25116 PE=4 SV=1
Gene Ontology
ID GO:0005759
description succinate dehydrogenase subunit 4 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48345: 22140-24031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005535_050 0.0 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
2 Hb_019962_030 0.0700605493 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
3 Hb_010128_130 0.0789285507 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
4 Hb_000473_040 0.0814731666 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
5 Hb_001369_650 0.0844484132 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
6 Hb_143766_090 0.086979521 - - 60S ribosomal protein L31B [Hevea brasiliensis]
7 Hb_005332_070 0.0895681655 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
8 Hb_000141_060 0.0898297681 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
9 Hb_000045_130 0.0937820519 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
10 Hb_002495_070 0.0939321102 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
11 Hb_001898_230 0.0940617149 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
12 Hb_009767_120 0.0963965483 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
13 Hb_004884_220 0.0967350713 - - hypothetical protein 29 [Hevea brasiliensis]
14 Hb_000933_180 0.0970152964 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
15 Hb_004722_060 0.0971044533 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
16 Hb_011360_140 0.0974844036 - - 40S ribosomal protein S19, putative [Ricinus communis]
17 Hb_000666_110 0.0986863403 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
18 Hb_000417_180 0.0995613277 - - 60S ribosomal protein L11, putative [Ricinus communis]
19 Hb_011794_090 0.0996788381 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
20 Hb_003752_080 0.1016170938 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005535_050 Hb_005535_050 Hb_019962_030 Hb_019962_030 Hb_005535_050--Hb_019962_030 Hb_010128_130 Hb_010128_130 Hb_005535_050--Hb_010128_130 Hb_000473_040 Hb_000473_040 Hb_005535_050--Hb_000473_040 Hb_001369_650 Hb_001369_650 Hb_005535_050--Hb_001369_650 Hb_143766_090 Hb_143766_090 Hb_005535_050--Hb_143766_090 Hb_005332_070 Hb_005332_070 Hb_005535_050--Hb_005332_070 Hb_000666_110 Hb_000666_110 Hb_019962_030--Hb_000666_110 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_001504_150 Hb_001504_150 Hb_019962_030--Hb_001504_150 Hb_001741_140 Hb_001741_140 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_011360_140 Hb_011360_140 Hb_000473_040--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_000473_040--Hb_012762_050 Hb_135545_010 Hb_135545_010 Hb_000473_040--Hb_135545_010 Hb_000473_040--Hb_005332_070 Hb_002007_060 Hb_002007_060 Hb_000473_040--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_000473_040--Hb_011571_020 Hb_000392_270 Hb_000392_270 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_001369_650--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_001369_650--Hb_003001_060 Hb_000977_080 Hb_000977_080 Hb_001369_650--Hb_000977_080 Hb_001369_650--Hb_009767_120 Hb_001514_020 Hb_001514_020 Hb_143766_090--Hb_001514_020 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_003688_100 Hb_003688_100 Hb_143766_090--Hb_003688_100 Hb_000141_060 Hb_000141_060 Hb_143766_090--Hb_000141_060 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050 Hb_005332_070--Hb_011571_020 Hb_000089_220 Hb_000089_220 Hb_005332_070--Hb_000089_220 Hb_005332_070--Hb_011360_140 Hb_005332_070--Hb_012762_050 Hb_003001_140 Hb_003001_140 Hb_005332_070--Hb_003001_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.6624 14.6258 12.0575 7.60639 37.2571 33.1504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4056 42.2678 18.7376 9.81279 3.84329

CAGE analysis