Hb_005535_060

Information

Type -
Description -
Location Contig5535: 32272-34399
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48347: 30552-34405 , PASA_asmbl_48348: 30492-32925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005535_060 0.0 - - -
2 Hb_000608_040 0.1033736664 - - -
3 Hb_001703_130 0.1338261531 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
4 Hb_002805_170 0.1498465275 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
5 Hb_012184_050 0.1529315202 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
6 Hb_001473_190 0.1699431154 - - 50S ribosomal protein L20 [Hevea brasiliensis]
7 Hb_063409_020 0.1727711681 - - Calcium-binding protein, putative [Ricinus communis]
8 Hb_010883_080 0.1732527563 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
9 Hb_001922_130 0.1734411782 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
10 Hb_000504_170 0.1735536075 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
11 Hb_000580_130 0.1812108709 - - hypothetical protein JCGZ_14541 [Jatropha curcas]
12 Hb_000116_570 0.1814837108 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
13 Hb_000169_190 0.185525094 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
14 Hb_002783_050 0.1902657502 - - zinc finger protein, putative [Ricinus communis]
15 Hb_140595_010 0.1905620447 - - -
16 Hb_121729_020 0.1950626731 - - DNA binding protein, putative [Ricinus communis]
17 Hb_000988_060 0.1952338218 - - hypothetical protein JCGZ_21307 [Jatropha curcas]
18 Hb_000093_130 0.1994495212 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
19 Hb_107847_010 0.2016241639 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
20 Hb_001473_080 0.2020195881 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005535_060 Hb_005535_060 Hb_000608_040 Hb_000608_040 Hb_005535_060--Hb_000608_040 Hb_001703_130 Hb_001703_130 Hb_005535_060--Hb_001703_130 Hb_002805_170 Hb_002805_170 Hb_005535_060--Hb_002805_170 Hb_012184_050 Hb_012184_050 Hb_005535_060--Hb_012184_050 Hb_001473_190 Hb_001473_190 Hb_005535_060--Hb_001473_190 Hb_063409_020 Hb_063409_020 Hb_005535_060--Hb_063409_020 Hb_000608_040--Hb_001703_130 Hb_000608_040--Hb_012184_050 Hb_000580_130 Hb_000580_130 Hb_000608_040--Hb_000580_130 Hb_000608_040--Hb_002805_170 Hb_001922_130 Hb_001922_130 Hb_000608_040--Hb_001922_130 Hb_001703_130--Hb_002805_170 Hb_000116_570 Hb_000116_570 Hb_001703_130--Hb_000116_570 Hb_001703_130--Hb_063409_020 Hb_010883_080 Hb_010883_080 Hb_001703_130--Hb_010883_080 Hb_000281_010 Hb_000281_010 Hb_001703_130--Hb_000281_010 Hb_000685_080 Hb_000685_080 Hb_001703_130--Hb_000685_080 Hb_002805_170--Hb_012184_050 Hb_007951_100 Hb_007951_100 Hb_002805_170--Hb_007951_100 Hb_002805_170--Hb_010883_080 Hb_000045_320 Hb_000045_320 Hb_002805_170--Hb_000045_320 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_000169_190 Hb_000169_190 Hb_012184_050--Hb_000169_190 Hb_012184_050--Hb_000045_320 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060 Hb_000093_130 Hb_000093_130 Hb_001473_190--Hb_000093_130 Hb_001473_190--Hb_000116_570 Hb_000684_300 Hb_000684_300 Hb_001473_190--Hb_000684_300 Hb_001473_190--Hb_001703_130 Hb_003813_200 Hb_003813_200 Hb_001473_190--Hb_003813_200 Hb_001473_190--Hb_063409_020 Hb_000976_080 Hb_000976_080 Hb_063409_020--Hb_000976_080 Hb_005846_020 Hb_005846_020 Hb_063409_020--Hb_005846_020 Hb_001473_080 Hb_001473_080 Hb_063409_020--Hb_001473_080 Hb_004920_060 Hb_004920_060 Hb_063409_020--Hb_004920_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3196 17.8928 16.2202 0.960506 35.2018 14.8857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.64864 3.49919 0.489222 2.08017 1.07492

CAGE analysis