Hb_005535_070

Information

Type -
Description -
Location Contig5535: 38138-42136
Sequence    

Annotation

kegg
ID rcu:RCOM_0085360
description hypothetical protein
nr
ID XP_002527870.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPF1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0085360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48352: 40109-41208
cDNA
(Sanger)
(ID:Location)		 019_I05.ab1: 40875-41361 , 020_J14.ab1: 37971-38473 , 023_M02.ab1: 40875-41361

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005535_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002391_030 0.0599995643 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
3 Hb_002835_310 0.0814621534 - - ATP binding protein, putative [Ricinus communis]
4 Hb_007545_070 0.0889210852 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
5 Hb_000239_050 0.0963548697 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
6 Hb_002822_010 0.098146191 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Populus euphratica]
7 Hb_000300_110 0.0990062206 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
8 Hb_000424_130 0.1012598971 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
9 Hb_005892_050 0.1025780878 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
10 Hb_001516_010 0.1037289002 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
11 Hb_000392_260 0.1042155964 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
12 Hb_003938_230 0.1044304234 - - Potassium transporter, putative [Ricinus communis]
13 Hb_005018_010 0.1062687871 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_001079_060 0.1075261831 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
15 Hb_127263_010 0.1084149276 - - hypothetical protein JCGZ_02828 [Jatropha curcas]
16 Hb_004602_010 0.1094555283 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
17 Hb_000008_150 0.1102518246 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
18 Hb_009788_020 0.1111757212 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
19 Hb_001488_420 0.1115992925 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
20 Hb_029920_010 0.1122511167 - - pepsin A, putative [Ricinus communis]

Gene co-expression network

sample Hb_005535_070 Hb_005535_070 Hb_002391_030 Hb_002391_030 Hb_005535_070--Hb_002391_030 Hb_002835_310 Hb_002835_310 Hb_005535_070--Hb_002835_310 Hb_007545_070 Hb_007545_070 Hb_005535_070--Hb_007545_070 Hb_000239_050 Hb_000239_050 Hb_005535_070--Hb_000239_050 Hb_002822_010 Hb_002822_010 Hb_005535_070--Hb_002822_010 Hb_000300_110 Hb_000300_110 Hb_005535_070--Hb_000300_110 Hb_002391_030--Hb_002835_310 Hb_002391_030--Hb_007545_070 Hb_000424_130 Hb_000424_130 Hb_002391_030--Hb_000424_130 Hb_001516_010 Hb_001516_010 Hb_002391_030--Hb_001516_010 Hb_174899_010 Hb_174899_010 Hb_002391_030--Hb_174899_010 Hb_000156_110 Hb_000156_110 Hb_002835_310--Hb_000156_110 Hb_002835_310--Hb_000424_130 Hb_002835_310--Hb_001516_010 Hb_002835_310--Hb_007545_070 Hb_003938_230 Hb_003938_230 Hb_002835_310--Hb_003938_230 Hb_006618_110 Hb_006618_110 Hb_007545_070--Hb_006618_110 Hb_007545_070--Hb_000300_110 Hb_005892_050 Hb_005892_050 Hb_007545_070--Hb_005892_050 Hb_007545_070--Hb_000239_050 Hb_007545_070--Hb_000424_130 Hb_127263_010 Hb_127263_010 Hb_000239_050--Hb_127263_010 Hb_000866_060 Hb_000866_060 Hb_000239_050--Hb_000866_060 Hb_000239_050--Hb_000300_110 Hb_000041_210 Hb_000041_210 Hb_000239_050--Hb_000041_210 Hb_000239_050--Hb_000424_130 Hb_001488_420 Hb_001488_420 Hb_002822_010--Hb_001488_420 Hb_009788_020 Hb_009788_020 Hb_002822_010--Hb_009788_020 Hb_002890_200 Hb_002890_200 Hb_002822_010--Hb_002890_200 Hb_004855_080 Hb_004855_080 Hb_002822_010--Hb_004855_080 Hb_002822_010--Hb_003938_230 Hb_000703_120 Hb_000703_120 Hb_002822_010--Hb_000703_120 Hb_000300_110--Hb_127263_010 Hb_029920_010 Hb_029920_010 Hb_000300_110--Hb_029920_010 Hb_000300_110--Hb_000866_060 Hb_000152_350 Hb_000152_350 Hb_000300_110--Hb_000152_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.47129 7.66172 4.53464 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114611 0 0 1.22547 6.01266

CAGE analysis