Hb_005539_010

Information

Type -
Description -
Location Contig5539: 4938-15637
Sequence    

Annotation

kegg
ID rcu:RCOM_0528960
description catalytic, putative
nr
ID XP_012085370.1
description PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
swissprot
ID Q74E53
description Dual-specificity RNA methyltransferase RlmN OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rlmN PE=3 SV=1
trembl
ID B9SHC0
description Catalytic, putative OS=Ricinus communis GN=RCOM_0528960 PE=3 SV=1
Gene Ontology
ID GO:0005737
description radical sam superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48355: 5250-5888 , PASA_asmbl_48356: 5927-9057 , PASA_asmbl_48357: 10082-15654 , PASA_asmbl_48358: 11003-11360 , PASA_asmbl_48359: 13379-15575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_010 0.0 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
2 Hb_006538_120 0.0710125717 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
3 Hb_000212_440 0.0726139355 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000941_100 0.0729094722 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
5 Hb_001935_100 0.0746839081 - - structural molecule, putative [Ricinus communis]
6 Hb_000227_170 0.0845252181 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_012150_030 0.0852236825 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
8 Hb_006907_060 0.0898953562 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
9 Hb_000061_180 0.0903717851 - - exonuclease, putative [Ricinus communis]
10 Hb_000221_140 0.0918828417 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
11 Hb_004452_120 0.0926504355 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
12 Hb_002631_240 0.0929103769 - - JHL17M24.3 [Jatropha curcas]
13 Hb_003053_110 0.0929660256 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
14 Hb_001022_030 0.0942404212 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
15 Hb_003747_230 0.0950147333 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
16 Hb_007741_110 0.09540618 - - -
17 Hb_000304_070 0.0957032255 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
18 Hb_001410_070 0.0961466657 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
19 Hb_010863_050 0.0965151954 - - OTU domain-containing protein 6B, putative [Ricinus communis]
20 Hb_005127_030 0.0968237224 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005539_010 Hb_005539_010 Hb_006538_120 Hb_006538_120 Hb_005539_010--Hb_006538_120 Hb_000212_440 Hb_000212_440 Hb_005539_010--Hb_000212_440 Hb_000941_100 Hb_000941_100 Hb_005539_010--Hb_000941_100 Hb_001935_100 Hb_001935_100 Hb_005539_010--Hb_001935_100 Hb_000227_170 Hb_000227_170 Hb_005539_010--Hb_000227_170 Hb_012150_030 Hb_012150_030 Hb_005539_010--Hb_012150_030 Hb_000221_140 Hb_000221_140 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_005127_030 Hb_005127_030 Hb_006538_120--Hb_005127_030 Hb_006538_120--Hb_000941_100 Hb_003376_230 Hb_003376_230 Hb_000212_440--Hb_003376_230 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_005405_020 Hb_005405_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120 Hb_003053_110 Hb_003053_110 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_001935_100--Hb_000227_170 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_005494_010 Hb_005494_010 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_012150_030--Hb_003053_110 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_012150_030--Hb_048093_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35357 3.32028 11.7784 6.84012 6.01371 4.44953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.28866 6.32536 4.57801 4.09143 14.4054

CAGE analysis