Hb_005539_020

Information

Type -
Description -
Location Contig5539: 17179-18202
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M0SRQ3
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48360: 17071-17946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_020 0.0 - - -
2 Hb_000526_030 0.1039463194 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
3 Hb_052764_030 0.1471621285 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
4 Hb_000023_350 0.1481036258 - - PREDICTED: probable folate-biopterin transporter 6 isoform X2 [Populus euphratica]
5 Hb_000802_190 0.1514061336 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
6 Hb_002631_040 0.1546869071 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
7 Hb_004319_070 0.1566797637 - - hypothetical protein RCOM_0852460 [Ricinus communis]
8 Hb_018790_080 0.1579628382 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
9 Hb_002107_060 0.1631278337 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
10 Hb_000169_170 0.1632970236 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
11 Hb_009486_160 0.1639074717 - - PREDICTED: metacaspase-1 [Jatropha curcas]
12 Hb_127599_010 0.1640226788 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
13 Hb_002301_170 0.1655513469 - - MAC/Perforin domain-containing protein [Theobroma cacao]
14 Hb_002897_050 0.1655691661 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
15 Hb_130389_010 0.1700432858 - - PREDICTED: la protein 1 [Jatropha curcas]
16 Hb_000512_010 0.1710670638 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
17 Hb_002477_120 0.171753364 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
18 Hb_005400_040 0.1720226073 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
19 Hb_001862_110 0.1729378611 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
20 Hb_001488_040 0.1733542549 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]

Gene co-expression network

sample Hb_005539_020 Hb_005539_020 Hb_000526_030 Hb_000526_030 Hb_005539_020--Hb_000526_030 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_000023_350 Hb_000023_350 Hb_005539_020--Hb_000023_350 Hb_000802_190 Hb_000802_190 Hb_005539_020--Hb_000802_190 Hb_002631_040 Hb_002631_040 Hb_005539_020--Hb_002631_040 Hb_004319_070 Hb_004319_070 Hb_005539_020--Hb_004319_070 Hb_000526_030--Hb_004319_070 Hb_130389_010 Hb_130389_010 Hb_000526_030--Hb_130389_010 Hb_000526_030--Hb_000023_350 Hb_000169_170 Hb_000169_170 Hb_000526_030--Hb_000169_170 Hb_012940_040 Hb_012940_040 Hb_000526_030--Hb_012940_040 Hb_000866_210 Hb_000866_210 Hb_052764_030--Hb_000866_210 Hb_009486_160 Hb_009486_160 Hb_052764_030--Hb_009486_160 Hb_002897_050 Hb_002897_050 Hb_052764_030--Hb_002897_050 Hb_002301_170 Hb_002301_170 Hb_052764_030--Hb_002301_170 Hb_001104_170 Hb_001104_170 Hb_052764_030--Hb_001104_170 Hb_000291_010 Hb_000291_010 Hb_052764_030--Hb_000291_010 Hb_000023_350--Hb_004319_070 Hb_000023_350--Hb_009486_160 Hb_029695_020 Hb_029695_020 Hb_000023_350--Hb_029695_020 Hb_003711_010 Hb_003711_010 Hb_000023_350--Hb_003711_010 Hb_000023_350--Hb_000169_170 Hb_000062_080 Hb_000062_080 Hb_000802_190--Hb_000062_080 Hb_002477_120 Hb_002477_120 Hb_000802_190--Hb_002477_120 Hb_127599_010 Hb_127599_010 Hb_000802_190--Hb_127599_010 Hb_000866_090 Hb_000866_090 Hb_000802_190--Hb_000866_090 Hb_004195_120 Hb_004195_120 Hb_000802_190--Hb_004195_120 Hb_003125_020 Hb_003125_020 Hb_000802_190--Hb_003125_020 Hb_001080_140 Hb_001080_140 Hb_002631_040--Hb_001080_140 Hb_002631_040--Hb_000866_090 Hb_002631_040--Hb_002301_170 Hb_001396_010 Hb_001396_010 Hb_002631_040--Hb_001396_010 Hb_007765_030 Hb_007765_030 Hb_002631_040--Hb_007765_030 Hb_001104_110 Hb_001104_110 Hb_002631_040--Hb_001104_110 Hb_004319_070--Hb_009486_160 Hb_000227_310 Hb_000227_310 Hb_004319_070--Hb_000227_310 Hb_004526_010 Hb_004526_010 Hb_004319_070--Hb_004526_010 Hb_004319_070--Hb_004195_120 Hb_000189_630 Hb_000189_630 Hb_004319_070--Hb_000189_630 Hb_011249_060 Hb_011249_060 Hb_004319_070--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33669 5.74051 2.73207 0.8824 1.19847 0.397245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87322 1.11743 0.552906 2.56696 0.716023

CAGE analysis