Hb_005539_030

Information

Type -
Description -
Location Contig5539: 17945-26900
Sequence    

Annotation

kegg
ID tcc:TCM_010311
description UB-like protease 1D
nr
ID XP_012085362.1
description PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
swissprot
ID Q2PS26
description Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1
trembl
ID A0A067JUQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17731 PE=4 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin-like-specific protease 1d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48361: 17947-18381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_030 0.0 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
2 Hb_000169_010 0.0586880452 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
3 Hb_004970_110 0.0592412185 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
4 Hb_000483_360 0.0603404636 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
5 Hb_004048_070 0.0725505968 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
6 Hb_000638_080 0.0726018428 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
7 Hb_007254_040 0.0749588753 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
8 Hb_003728_030 0.0780728336 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
9 Hb_000720_120 0.0799769699 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
10 Hb_015746_010 0.083421795 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
11 Hb_000853_170 0.0846569041 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
12 Hb_004223_090 0.0849891308 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
13 Hb_012022_030 0.0857442703 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
14 Hb_000057_200 0.0858642086 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
15 Hb_001936_020 0.086225309 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
16 Hb_002030_030 0.087776269 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
17 Hb_001135_050 0.0890464162 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
18 Hb_001604_010 0.0895433075 - - 14-3-3 protein, putative [Ricinus communis]
19 Hb_002232_170 0.0896610911 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
20 Hb_003392_040 0.090463982 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]

Gene co-expression network

sample Hb_005539_030 Hb_005539_030 Hb_000169_010 Hb_000169_010 Hb_005539_030--Hb_000169_010 Hb_004970_110 Hb_004970_110 Hb_005539_030--Hb_004970_110 Hb_000483_360 Hb_000483_360 Hb_005539_030--Hb_000483_360 Hb_004048_070 Hb_004048_070 Hb_005539_030--Hb_004048_070 Hb_000638_080 Hb_000638_080 Hb_005539_030--Hb_000638_080 Hb_007254_040 Hb_007254_040 Hb_005539_030--Hb_007254_040 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_000169_010--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_007317_180 Hb_007317_180 Hb_004970_110--Hb_007317_180 Hb_004970_110--Hb_007254_040 Hb_004970_110--Hb_004048_070 Hb_027472_150 Hb_027472_150 Hb_004970_110--Hb_027472_150 Hb_004970_110--Hb_000169_010 Hb_003728_030 Hb_003728_030 Hb_000483_360--Hb_003728_030 Hb_001936_020 Hb_001936_020 Hb_000483_360--Hb_001936_020 Hb_000556_020 Hb_000556_020 Hb_000483_360--Hb_000556_020 Hb_005215_030 Hb_005215_030 Hb_000483_360--Hb_005215_030 Hb_000300_280 Hb_000300_280 Hb_000483_360--Hb_000300_280 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_032717_080 Hb_032717_080 Hb_004048_070--Hb_032717_080 Hb_004048_070--Hb_007254_040 Hb_004048_070--Hb_001135_050 Hb_000638_080--Hb_000720_120 Hb_000638_080--Hb_001135_050 Hb_000638_080--Hb_000169_010 Hb_000638_080--Hb_004048_070 Hb_001221_410 Hb_001221_410 Hb_000638_080--Hb_001221_410 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_007317_180 Hb_011310_190 Hb_011310_190 Hb_007254_040--Hb_011310_190 Hb_007254_040--Hb_001135_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4484 5.92522 3.86762 4.2858 12.2546 13.5615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5442 9.34963 7.81614 9.78248 2.82675

CAGE analysis