Hb_005539_040

Information

Type -
Description -
Location Contig5539: 30395-38393
Sequence    

Annotation

kegg
ID rcu:RCOM_0527800
description hypothetical protein
nr
ID XP_012085360.1
description PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
swissprot
ID P49756
description RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
trembl
ID A0A067JRQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17730 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 25 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48362: 32084-35528 , PASA_asmbl_48363: 30656-35528 , PASA_asmbl_48364: 33517-35528 , PASA_asmbl_48365: 30656-32074 , PASA_asmbl_48366: 35769-38386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_040 0.0 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
2 Hb_000300_250 0.0623194933 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
3 Hb_009449_090 0.0653342431 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
4 Hb_010661_020 0.0716368572 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
5 Hb_007576_220 0.0731022259 - - PREDICTED: kanadaptin [Jatropha curcas]
6 Hb_011920_020 0.0763875286 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
7 Hb_001221_090 0.0800730328 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
8 Hb_000086_050 0.0831389064 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
9 Hb_155159_010 0.0859992176 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
10 Hb_007576_230 0.0883095841 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
11 Hb_000102_050 0.0885308161 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
12 Hb_007283_030 0.0885550353 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
13 Hb_000866_080 0.0909007598 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
14 Hb_030545_030 0.0913533738 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
15 Hb_002282_060 0.0925356188 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
16 Hb_000227_310 0.092960964 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
17 Hb_000003_400 0.0939735199 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_003895_020 0.0941828279 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
19 Hb_002811_040 0.0942009197 - - 5'->3' exoribonuclease, putative [Ricinus communis]
20 Hb_004724_370 0.0946068667 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_005539_040 Hb_005539_040 Hb_000300_250 Hb_000300_250 Hb_005539_040--Hb_000300_250 Hb_009449_090 Hb_009449_090 Hb_005539_040--Hb_009449_090 Hb_010661_020 Hb_010661_020 Hb_005539_040--Hb_010661_020 Hb_007576_220 Hb_007576_220 Hb_005539_040--Hb_007576_220 Hb_011920_020 Hb_011920_020 Hb_005539_040--Hb_011920_020 Hb_001221_090 Hb_001221_090 Hb_005539_040--Hb_001221_090 Hb_000866_080 Hb_000866_080 Hb_000300_250--Hb_000866_080 Hb_000086_050 Hb_000086_050 Hb_000300_250--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_000300_250--Hb_007576_230 Hb_000300_250--Hb_001221_090 Hb_000300_250--Hb_009449_090 Hb_009449_090--Hb_007576_220 Hb_009449_090--Hb_000086_050 Hb_002571_030 Hb_002571_030 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_007283_030 Hb_007283_030 Hb_009449_090--Hb_007283_030 Hb_005542_050 Hb_005542_050 Hb_010661_020--Hb_005542_050 Hb_000926_010 Hb_000926_010 Hb_010661_020--Hb_000926_010 Hb_002282_060 Hb_002282_060 Hb_010661_020--Hb_002282_060 Hb_155159_010 Hb_155159_010 Hb_010661_020--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_010661_020--Hb_001231_090 Hb_007576_220--Hb_007576_230 Hb_007576_220--Hb_155159_010 Hb_007576_220--Hb_000086_050 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280 Hb_011920_020--Hb_155159_010 Hb_001674_040 Hb_001674_040 Hb_011920_020--Hb_001674_040 Hb_011920_020--Hb_001221_090 Hb_011920_020--Hb_010661_020 Hb_096819_010 Hb_096819_010 Hb_011920_020--Hb_096819_010 Hb_002092_070 Hb_002092_070 Hb_011920_020--Hb_002092_070 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.986 55.801 37.2742 19.7363 27.0521 19.1951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.35028 12.27 5.63478 23.7486 27.3085

CAGE analysis