Hb_005539_100

Information

Type -
Description -
Location Contig5539: 67987-70874
Sequence    

Annotation

kegg
ID rcu:RCOM_0527650
description nucleoside transporter, putative
nr
ID XP_002525348.1
description nucleoside transporter, putative [Ricinus communis]
swissprot
ID Q8VXY7
description Equilibrative nucleotide transporter 1 OS=Arabidopsis thaliana GN=ENT1 PE=1 SV=1
trembl
ID B9SH79
description Nucleoside transporter, putative OS=Ricinus communis GN=RCOM_0527650 PE=4 SV=1
Gene Ontology
ID GO:0016021
description equilibrative nucleotide transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48378: 67989-70525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_100 0.0 - - nucleoside transporter, putative [Ricinus communis]
2 Hb_172676_010 0.0915976052 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
3 Hb_011381_070 0.1011094664 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
4 Hb_001158_120 0.1021903688 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
5 Hb_000366_050 0.1029585662 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
6 Hb_002073_020 0.1075302412 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
7 Hb_000369_070 0.1207065352 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_000008_430 0.1226288399 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
9 Hb_187005_010 0.1234025484 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
10 Hb_001195_230 0.1237077636 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
11 Hb_000100_210 0.1281711508 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
12 Hb_023386_050 0.1284568135 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000069_430 0.1288379387 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
14 Hb_149484_010 0.1309580672 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
15 Hb_132840_020 0.1329607661 - - PREDICTED: protein LHY [Jatropha curcas]
16 Hb_000007_440 0.1340691091 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
17 Hb_001294_040 0.1342185778 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
18 Hb_005375_070 0.1349574885 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
19 Hb_003905_040 0.1355738389 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
20 Hb_002343_020 0.1355996619 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005539_100 Hb_005539_100 Hb_172676_010 Hb_172676_010 Hb_005539_100--Hb_172676_010 Hb_011381_070 Hb_011381_070 Hb_005539_100--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_005539_100--Hb_001158_120 Hb_000366_050 Hb_000366_050 Hb_005539_100--Hb_000366_050 Hb_002073_020 Hb_002073_020 Hb_005539_100--Hb_002073_020 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_172676_010--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_001951_240 Hb_001951_240 Hb_172676_010--Hb_001951_240 Hb_011381_070--Hb_000366_050 Hb_011381_070--Hb_001158_120 Hb_000035_490 Hb_000035_490 Hb_011381_070--Hb_000035_490 Hb_002609_290 Hb_002609_290 Hb_011381_070--Hb_002609_290 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_001158_120--Hb_000366_050 Hb_001158_120--Hb_001294_040 Hb_001158_120--Hb_002609_290 Hb_007483_080 Hb_007483_080 Hb_001158_120--Hb_007483_080 Hb_000366_050--Hb_002609_290 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_000366_050--Hb_001294_040 Hb_002073_020--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_002073_020--Hb_000649_300 Hb_001053_200 Hb_001053_200 Hb_002073_020--Hb_001053_200 Hb_005496_160 Hb_005496_160 Hb_002073_020--Hb_005496_160 Hb_000522_130 Hb_000522_130 Hb_000369_070--Hb_000522_130 Hb_001538_050 Hb_001538_050 Hb_000369_070--Hb_001538_050 Hb_006483_090 Hb_006483_090 Hb_000369_070--Hb_006483_090 Hb_004605_020 Hb_004605_020 Hb_000369_070--Hb_004605_020 Hb_023386_050 Hb_023386_050 Hb_000369_070--Hb_023386_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89172 57.7301 42.7376 26.0697 4.72973 3.70309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.495897 0.867016 1.18564 21.4181 28.782

CAGE analysis