Hb_005539_170

Information

Type -
Description -
Location Contig5539: 116564-123228
Sequence    

Annotation

kegg
ID tcc:TCM_017700
description Retrotransposon protein, putative
nr
ID XP_012575241.1
description PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061EE03
description Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_017700 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_170 0.0 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
2 Hb_000108_170 0.2557183596 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
3 Hb_000483_110 0.2769416848 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
4 Hb_000190_100 0.280485003 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
5 Hb_000589_130 0.291418207 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
6 Hb_001008_040 0.2933608748 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
7 Hb_029393_020 0.2993926295 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
8 Hb_000067_010 0.3007885847 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
9 Hb_012760_020 0.3070684509 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
10 Hb_005841_080 0.3073549055 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
11 Hb_000733_210 0.3073710592 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
12 Hb_005539_250 0.3145232752 - - -
13 Hb_002666_020 0.314541259 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
14 Hb_134894_010 0.3177103146 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
15 Hb_034337_010 0.3211924487 - - vesicle-associated membrane protein, putative [Ricinus communis]
16 Hb_002656_010 0.322587687 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_157846_010 0.3228439761 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
18 Hb_008494_050 0.3262210395 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
19 Hb_011618_040 0.3281328658 - - conserved hypothetical protein [Ricinus communis]
20 Hb_027445_050 0.3323833458 - - PREDICTED: titin isoform X13 [Jatropha curcas]

Gene co-expression network

sample Hb_005539_170 Hb_005539_170 Hb_000108_170 Hb_000108_170 Hb_005539_170--Hb_000108_170 Hb_000483_110 Hb_000483_110 Hb_005539_170--Hb_000483_110 Hb_000190_100 Hb_000190_100 Hb_005539_170--Hb_000190_100 Hb_000589_130 Hb_000589_130 Hb_005539_170--Hb_000589_130 Hb_001008_040 Hb_001008_040 Hb_005539_170--Hb_001008_040 Hb_029393_020 Hb_029393_020 Hb_005539_170--Hb_029393_020 Hb_007676_020 Hb_007676_020 Hb_000108_170--Hb_007676_020 Hb_011512_130 Hb_011512_130 Hb_000108_170--Hb_011512_130 Hb_005841_080 Hb_005841_080 Hb_000108_170--Hb_005841_080 Hb_008066_070 Hb_008066_070 Hb_000108_170--Hb_008066_070 Hb_012760_020 Hb_012760_020 Hb_000108_170--Hb_012760_020 Hb_000733_210 Hb_000733_210 Hb_000108_170--Hb_000733_210 Hb_011618_040 Hb_011618_040 Hb_000483_110--Hb_011618_040 Hb_058116_010 Hb_058116_010 Hb_000483_110--Hb_058116_010 Hb_002110_260 Hb_002110_260 Hb_000483_110--Hb_002110_260 Hb_000556_110 Hb_000556_110 Hb_000483_110--Hb_000556_110 Hb_000243_110 Hb_000243_110 Hb_000483_110--Hb_000243_110 Hb_096811_010 Hb_096811_010 Hb_000483_110--Hb_096811_010 Hb_000152_020 Hb_000152_020 Hb_000190_100--Hb_000152_020 Hb_007380_010 Hb_007380_010 Hb_000190_100--Hb_007380_010 Hb_017434_060 Hb_017434_060 Hb_000190_100--Hb_017434_060 Hb_000190_100--Hb_005841_080 Hb_000215_410 Hb_000215_410 Hb_000190_100--Hb_000215_410 Hb_000140_410 Hb_000140_410 Hb_000190_100--Hb_000140_410 Hb_000022_180 Hb_000022_180 Hb_000589_130--Hb_000022_180 Hb_004648_100 Hb_004648_100 Hb_000589_130--Hb_004648_100 Hb_000589_130--Hb_029393_020 Hb_005147_040 Hb_005147_040 Hb_000589_130--Hb_005147_040 Hb_060909_010 Hb_060909_010 Hb_000589_130--Hb_060909_010 Hb_001251_070 Hb_001251_070 Hb_000589_130--Hb_001251_070 Hb_003609_020 Hb_003609_020 Hb_001008_040--Hb_003609_020 Hb_008225_070 Hb_008225_070 Hb_001008_040--Hb_008225_070 Hb_000045_150 Hb_000045_150 Hb_001008_040--Hb_000045_150 Hb_000500_140 Hb_000500_140 Hb_001008_040--Hb_000500_140 Hb_001008_040--Hb_000733_210 Hb_159921_010 Hb_159921_010 Hb_001008_040--Hb_159921_010 Hb_029393_020--Hb_001251_070 Hb_147996_010 Hb_147996_010 Hb_029393_020--Hb_147996_010 Hb_006615_040 Hb_006615_040 Hb_029393_020--Hb_006615_040 Hb_000566_190 Hb_000566_190 Hb_029393_020--Hb_000566_190 Hb_007253_040 Hb_007253_040 Hb_029393_020--Hb_007253_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00937534 0.0346976 0.00364663 0.00344421 0 0.0213541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0160529 0.0430232 0

CAGE analysis