Hb_005539_220

Information

Type -
Description -
Location Contig5539: 156111-161172
Sequence    

Annotation

kegg
ID rcu:RCOM_0285840
description spermidine synthase 1, putative (EC:2.1.1.53)
nr
ID XP_002534321.1
description spermidine synthase 1, putative [Ricinus communis]
swissprot
ID O82147
description Spermidine synthase OS=Coffea arabica PE=2 SV=1
trembl
ID B9T7V2
description Spermidine synthase 1, putative OS=Ricinus communis GN=RCOM_0285840 PE=3 SV=1
Gene Ontology
ID GO:0003824
description spermidine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48383: 156138-161143 , PASA_asmbl_48384: 156779-157119 , PASA_asmbl_48385: 161156-161381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_220 0.0 - - spermidine synthase 1, putative [Ricinus communis]
2 Hb_007075_040 0.0393533842 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
3 Hb_000020_190 0.0693669509 - - hypothetical protein RCOM_0452240 [Ricinus communis]
4 Hb_000789_060 0.078890153 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
5 Hb_000230_200 0.0795554814 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
6 Hb_000230_560 0.0830892233 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
7 Hb_008246_040 0.0831823385 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
8 Hb_008092_040 0.0836247294 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
9 Hb_000403_050 0.0849926599 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
10 Hb_036790_100 0.0857204488 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
11 Hb_000302_270 0.089081 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
12 Hb_000416_040 0.0891545238 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
13 Hb_000210_180 0.0897723968 - - PREDICTED: protein YLS9-like [Jatropha curcas]
14 Hb_007416_280 0.09055242 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005357_080 0.0909612016 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
16 Hb_001258_090 0.091402419 - - PREDICTED: protein spt2-like [Jatropha curcas]
17 Hb_003665_060 0.0921121517 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
18 Hb_000618_040 0.0921361709 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
19 Hb_010139_040 0.0922769568 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000699_140 0.0926423476 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005539_220 Hb_005539_220 Hb_007075_040 Hb_007075_040 Hb_005539_220--Hb_007075_040 Hb_000020_190 Hb_000020_190 Hb_005539_220--Hb_000020_190 Hb_000789_060 Hb_000789_060 Hb_005539_220--Hb_000789_060 Hb_000230_200 Hb_000230_200 Hb_005539_220--Hb_000230_200 Hb_000230_560 Hb_000230_560 Hb_005539_220--Hb_000230_560 Hb_008246_040 Hb_008246_040 Hb_005539_220--Hb_008246_040 Hb_007075_040--Hb_000230_560 Hb_003665_060 Hb_003665_060 Hb_007075_040--Hb_003665_060 Hb_156973_010 Hb_156973_010 Hb_007075_040--Hb_156973_010 Hb_007075_040--Hb_000020_190 Hb_000883_020 Hb_000883_020 Hb_007075_040--Hb_000883_020 Hb_006922_100 Hb_006922_100 Hb_000020_190--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_000020_190--Hb_001124_160 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_000302_270 Hb_000302_270 Hb_000789_060--Hb_000302_270 Hb_000789_060--Hb_008246_040 Hb_000403_050 Hb_000403_050 Hb_000789_060--Hb_000403_050 Hb_002671_140 Hb_002671_140 Hb_000789_060--Hb_002671_140 Hb_000521_320 Hb_000521_320 Hb_000789_060--Hb_000521_320 Hb_002968_060 Hb_002968_060 Hb_000230_200--Hb_002968_060 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_003001_120 Hb_003001_120 Hb_000230_200--Hb_003001_120 Hb_001269_680 Hb_001269_680 Hb_000230_200--Hb_001269_680 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050 Hb_002997_080 Hb_002997_080 Hb_000230_560--Hb_002997_080 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_000230_560--Hb_000883_020 Hb_008246_040--Hb_000915_020 Hb_000442_150 Hb_000442_150 Hb_008246_040--Hb_000442_150 Hb_008246_040--Hb_000020_190 Hb_014497_050 Hb_014497_050 Hb_008246_040--Hb_014497_050 Hb_008246_040--Hb_002671_140 Hb_000185_070 Hb_000185_070 Hb_008246_040--Hb_000185_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.9634 39.1522 48.8683 40.424 39.7705 83.7832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.8992 62.283 64.8693 36.76 36.9226

CAGE analysis