Hb_005539_240

Information

Type -
Description -
Location Contig5539: 170885-180109
Sequence    

Annotation

kegg
ID -
description -
nr
ID EYU31284.1
description hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022QUK4
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0220462mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description potassium transporter 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48386: 175306-175883 , PASA_asmbl_48387: 178161-178329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_240 0.0 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
2 Hb_000368_060 0.0965083414 - - thioredoxin H-type 6 [Hevea brasiliensis]
3 Hb_001232_130 0.1172663118 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
4 Hb_008931_010 0.1177495993 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
5 Hb_000061_300 0.1239556675 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
6 Hb_001575_020 0.1264430307 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001616_060 0.1306869298 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
8 Hb_003929_120 0.1312367623 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
9 Hb_000162_140 0.1319123877 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
10 Hb_000562_040 0.1331654676 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
11 Hb_011245_020 0.1341708589 - - Ferrochelatase [Medicago truncatula]
12 Hb_024714_060 0.1352409324 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
13 Hb_007594_120 0.135409909 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
14 Hb_002759_240 0.136106709 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
15 Hb_005839_110 0.1365988415 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
16 Hb_000784_030 0.1387779759 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
17 Hb_001762_060 0.1390226615 - - pantothenate kinase, putative [Ricinus communis]
18 Hb_001946_320 0.1392411874 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
19 Hb_002876_120 0.1399710013 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
20 Hb_000432_050 0.1399853362 - - GTP-binding protein typa/bipa, putative [Ricinus communis]

Gene co-expression network

sample Hb_005539_240 Hb_005539_240 Hb_000368_060 Hb_000368_060 Hb_005539_240--Hb_000368_060 Hb_001232_130 Hb_001232_130 Hb_005539_240--Hb_001232_130 Hb_008931_010 Hb_008931_010 Hb_005539_240--Hb_008931_010 Hb_000061_300 Hb_000061_300 Hb_005539_240--Hb_000061_300 Hb_001575_020 Hb_001575_020 Hb_005539_240--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_005539_240--Hb_001616_060 Hb_000562_040 Hb_000562_040 Hb_000368_060--Hb_000562_040 Hb_000784_030 Hb_000784_030 Hb_000368_060--Hb_000784_030 Hb_000103_110 Hb_000103_110 Hb_000368_060--Hb_000103_110 Hb_003581_260 Hb_003581_260 Hb_000368_060--Hb_003581_260 Hb_011360_080 Hb_011360_080 Hb_000368_060--Hb_011360_080 Hb_002307_090 Hb_002307_090 Hb_001232_130--Hb_002307_090 Hb_001946_320 Hb_001946_320 Hb_001232_130--Hb_001946_320 Hb_000749_250 Hb_000749_250 Hb_001232_130--Hb_000749_250 Hb_003943_030 Hb_003943_030 Hb_001232_130--Hb_003943_030 Hb_010589_040 Hb_010589_040 Hb_001232_130--Hb_010589_040 Hb_002936_050 Hb_002936_050 Hb_001232_130--Hb_002936_050 Hb_005505_020 Hb_005505_020 Hb_008931_010--Hb_005505_020 Hb_002759_240 Hb_002759_240 Hb_008931_010--Hb_002759_240 Hb_001846_070 Hb_001846_070 Hb_008931_010--Hb_001846_070 Hb_061802_010 Hb_061802_010 Hb_008931_010--Hb_061802_010 Hb_002182_090 Hb_002182_090 Hb_008931_010--Hb_002182_090 Hb_000061_300--Hb_001575_020 Hb_000061_300--Hb_001616_060 Hb_000061_300--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160 Hb_001575_020--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_001575_020--Hb_003929_120 Hb_002097_060 Hb_002097_060 Hb_001575_020--Hb_002097_060 Hb_000069_100 Hb_000069_100 Hb_001575_020--Hb_000069_100 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030 Hb_001616_060--Hb_000069_100 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_001616_060--Hb_007382_150 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.49094 0.913979 1.17236 1.09384 5.57958 3.73358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3499 20.5949 25.6271 3.39258 4.15105

CAGE analysis