Hb_005539_260

Information

Type -
Description -
Location Contig5539: 194195-200475
Sequence    

Annotation

kegg
ID rcu:RCOM_0245560
description Potassium transporter, putative
nr
ID XP_012085341.1
description PREDICTED: potassium transporter 6 [Jatropha curcas]
swissprot
ID Q8W4I4
description Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1
trembl
ID A0A067K428
description Potassium transporter OS=Jatropha curcas GN=JCGZ_17717 PE=3 SV=1
Gene Ontology
ID GO:0016020
description potassium transporter 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48392: 196751-198512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_260 0.0 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
2 Hb_000094_120 0.1687928762 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
3 Hb_001486_200 0.1691319306 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
4 Hb_023344_060 0.1735141202 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
5 Hb_002027_030 0.1784242962 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000554_030 0.1790756075 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
7 Hb_000913_080 0.1889729585 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
8 Hb_014720_050 0.1945611828 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
9 Hb_025708_020 0.195017585 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_000207_290 0.1951236536 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
11 Hb_002597_020 0.1969477283 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_002284_080 0.2012385744 - - protein with unknown function [Ricinus communis]
13 Hb_025708_010 0.2019734054 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
14 Hb_000094_250 0.2044036827 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
15 Hb_000059_300 0.2119106689 - - caspase, putative [Ricinus communis]
16 Hb_168319_010 0.213647355 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
17 Hb_183086_070 0.2140800443 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
18 Hb_000028_340 0.2149417232 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
19 Hb_000856_050 0.2162024761 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
20 Hb_000735_080 0.2175533773 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_005539_260 Hb_005539_260 Hb_000094_120 Hb_000094_120 Hb_005539_260--Hb_000094_120 Hb_001486_200 Hb_001486_200 Hb_005539_260--Hb_001486_200 Hb_023344_060 Hb_023344_060 Hb_005539_260--Hb_023344_060 Hb_002027_030 Hb_002027_030 Hb_005539_260--Hb_002027_030 Hb_000554_030 Hb_000554_030 Hb_005539_260--Hb_000554_030 Hb_000913_080 Hb_000913_080 Hb_005539_260--Hb_000913_080 Hb_000094_250 Hb_000094_250 Hb_000094_120--Hb_000094_250 Hb_000062_490 Hb_000062_490 Hb_000094_120--Hb_000062_490 Hb_068576_010 Hb_068576_010 Hb_000094_120--Hb_068576_010 Hb_002030_180 Hb_002030_180 Hb_000094_120--Hb_002030_180 Hb_006615_160 Hb_006615_160 Hb_000094_120--Hb_006615_160 Hb_000059_300 Hb_000059_300 Hb_001486_200--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_001486_200--Hb_000110_300 Hb_001049_160 Hb_001049_160 Hb_001486_200--Hb_001049_160 Hb_002876_250 Hb_002876_250 Hb_001486_200--Hb_002876_250 Hb_014720_050 Hb_014720_050 Hb_001486_200--Hb_014720_050 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010 Hb_000116_210 Hb_000116_210 Hb_023344_060--Hb_000116_210 Hb_012286_090 Hb_012286_090 Hb_023344_060--Hb_012286_090 Hb_000111_370 Hb_000111_370 Hb_023344_060--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_023344_060--Hb_009372_020 Hb_004724_330 Hb_004724_330 Hb_023344_060--Hb_004724_330 Hb_000805_190 Hb_000805_190 Hb_023344_060--Hb_000805_190 Hb_168319_010 Hb_168319_010 Hb_002027_030--Hb_168319_010 Hb_012340_060 Hb_012340_060 Hb_002027_030--Hb_012340_060 Hb_000123_220 Hb_000123_220 Hb_002027_030--Hb_000123_220 Hb_025708_010 Hb_025708_010 Hb_002027_030--Hb_025708_010 Hb_001817_100 Hb_001817_100 Hb_002027_030--Hb_001817_100 Hb_000398_050 Hb_000398_050 Hb_000554_030--Hb_000398_050 Hb_007975_050 Hb_007975_050 Hb_000554_030--Hb_007975_050 Hb_000856_050 Hb_000856_050 Hb_000554_030--Hb_000856_050 Hb_002660_060 Hb_002660_060 Hb_000554_030--Hb_002660_060 Hb_002527_050 Hb_002527_050 Hb_000554_030--Hb_002527_050 Hb_011618_100 Hb_011618_100 Hb_000913_080--Hb_011618_100 Hb_000913_080--Hb_001486_200 Hb_001433_160 Hb_001433_160 Hb_000913_080--Hb_001433_160 Hb_001381_060 Hb_001381_060 Hb_000913_080--Hb_001381_060 Hb_000913_080--Hb_014720_050 Hb_002284_080 Hb_002284_080 Hb_000913_080--Hb_002284_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.528925 11.5045 5.58801 10.799 0.232971 0.172348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07757 1.01247 8.26557 7.49884 2.15617

CAGE analysis