Hb_005539_300

Information

Type -
Description -
Location Contig5539: 230379-230618
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02360g
description hypothetical protein
nr
ID XP_011038265.1
description PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A059A7Z0
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K032781 PE=4 SV=1
Gene Ontology
ID GO:0016706
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_300 0.0 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
2 Hb_000071_200 0.211349843 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
3 Hb_001676_030 0.2313682199 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_142068_020 0.252330459 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
5 Hb_000454_020 0.2524035165 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_000656_130 0.2529150497 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
7 Hb_001217_060 0.2589767875 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_012188_010 0.2695584166 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_049014_010 0.2695986784 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
10 Hb_001673_030 0.2757594443 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
11 Hb_075481_010 0.2829765857 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
12 Hb_187661_010 0.2877065202 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
13 Hb_005671_030 0.2925035647 - - -
14 Hb_101040_010 0.2950936624 - - -
15 Hb_122567_010 0.2973338996 - - -
16 Hb_019654_120 0.298780593 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
17 Hb_011909_090 0.3009923867 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105633212 [Jatropha curcas]
18 Hb_002928_100 0.30556997 - - -
19 Hb_008891_020 0.3131404744 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
20 Hb_056305_010 0.3131856933 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_005539_300 Hb_005539_300 Hb_000071_200 Hb_000071_200 Hb_005539_300--Hb_000071_200 Hb_001676_030 Hb_001676_030 Hb_005539_300--Hb_001676_030 Hb_142068_020 Hb_142068_020 Hb_005539_300--Hb_142068_020 Hb_000454_020 Hb_000454_020 Hb_005539_300--Hb_000454_020 Hb_000656_130 Hb_000656_130 Hb_005539_300--Hb_000656_130 Hb_001217_060 Hb_001217_060 Hb_005539_300--Hb_001217_060 Hb_000071_200--Hb_001217_060 Hb_012188_010 Hb_012188_010 Hb_000071_200--Hb_012188_010 Hb_032076_010 Hb_032076_010 Hb_000071_200--Hb_032076_010 Hb_101040_010 Hb_101040_010 Hb_000071_200--Hb_101040_010 Hb_000071_200--Hb_001676_030 Hb_001676_030--Hb_101040_010 Hb_005671_030 Hb_005671_030 Hb_001676_030--Hb_005671_030 Hb_187661_010 Hb_187661_010 Hb_001676_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_001676_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_001676_030--Hb_056305_010 Hb_142068_020--Hb_000454_020 Hb_142068_020--Hb_000656_130 Hb_049014_010 Hb_049014_010 Hb_142068_020--Hb_049014_010 Hb_075481_010 Hb_075481_010 Hb_142068_020--Hb_075481_010 Hb_122567_010 Hb_122567_010 Hb_142068_020--Hb_122567_010 Hb_142068_020--Hb_187661_010 Hb_000454_020--Hb_000656_130 Hb_000454_020--Hb_049014_010 Hb_000454_020--Hb_075481_010 Hb_000454_020--Hb_122567_010 Hb_000454_020--Hb_187661_010 Hb_000656_130--Hb_049014_010 Hb_000656_130--Hb_075481_010 Hb_000656_130--Hb_122567_010 Hb_000656_130--Hb_187661_010 Hb_001217_060--Hb_012188_010 Hb_001217_060--Hb_032076_010 Hb_000579_150 Hb_000579_150 Hb_001217_060--Hb_000579_150 Hb_005504_010 Hb_005504_010 Hb_001217_060--Hb_005504_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7714 1.88713 0.318535 0 0 6.59529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43116 0 0 0 0

CAGE analysis