Hb_005539_350

Information

Type -
Description -
Location Contig5539: 269127-283859
Sequence    

Annotation

kegg
ID rcu:RCOM_0463550
description hypothetical protein
nr
ID XP_002532369.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54NA3
description Autophagy-related protein 9 OS=Dictyostelium discoideum GN=atg9 PE=2 SV=1
trembl
ID B9T2A0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0463550 PE=4 SV=1
Gene Ontology
ID GO:0006635
description autophagy-related protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48409: 269192-283762 , PASA_asmbl_48410: 269192-271933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001269_680 0.0512792664 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
3 Hb_006541_030 0.0623465493 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
4 Hb_007380_070 0.0624695204 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
5 Hb_002874_190 0.0628822679 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
6 Hb_002007_060 0.063404565 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
7 Hb_000840_030 0.0642098743 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
8 Hb_011689_080 0.0648453019 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
9 Hb_003929_160 0.0661020099 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
10 Hb_153112_020 0.0689300376 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
11 Hb_004324_310 0.0701682128 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000398_180 0.0715092955 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
13 Hb_063716_050 0.0722173984 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
14 Hb_003001_120 0.0741517777 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
15 Hb_029866_090 0.074153259 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
16 Hb_011224_110 0.0772017377 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
17 Hb_000103_560 0.0783639618 - - ADP-ribosylation factor, putative [Ricinus communis]
18 Hb_001301_160 0.0783773462 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
19 Hb_010504_020 0.0794205851 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
20 Hb_028995_040 0.0795136675 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005539_350 Hb_005539_350 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_006541_030 Hb_006541_030 Hb_005539_350--Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_005539_350--Hb_007380_070 Hb_002874_190 Hb_002874_190 Hb_005539_350--Hb_002874_190 Hb_002007_060 Hb_002007_060 Hb_005539_350--Hb_002007_060 Hb_000840_030 Hb_000840_030 Hb_005539_350--Hb_000840_030 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_001269_680--Hb_002007_060 Hb_003001_120 Hb_003001_120 Hb_001269_680--Hb_003001_120 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_000230_200 Hb_000230_200 Hb_001269_680--Hb_000230_200 Hb_006541_030--Hb_007380_070 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_006541_030--Hb_002874_190 Hb_001671_020 Hb_001671_020 Hb_007380_070--Hb_001671_020 Hb_007380_070--Hb_000398_180 Hb_003929_160 Hb_003929_160 Hb_007380_070--Hb_003929_160 Hb_028872_140 Hb_028872_140 Hb_007380_070--Hb_028872_140 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_165132_010 Hb_165132_010 Hb_002874_190--Hb_165132_010 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_002874_190--Hb_000840_030 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_153112_020 Hb_153112_020 Hb_000840_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_000840_030--Hb_000331_080 Hb_002030_040 Hb_002030_040 Hb_000840_030--Hb_002030_040 Hb_000840_030--Hb_006541_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6923 9.40388 10.7103 9.51194 16.7412 21.2196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3769 26.1618 22.9909 6.1406 6.93266

CAGE analysis