Hb_005539_370

Information

Type -
Description -
Location Contig5539: 289326-290357
Sequence    

Annotation

kegg
ID rcu:RCOM_0463530
description ring finger protein, putative
nr
ID XP_002532367.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID P93823
description RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1
trembl
ID B9T298
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0463530 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48412: 288871-290416
cDNA
(Sanger)
(ID:Location)		 013_L18.ab1: 289710-290416 , 014_H22.ab1: 289666-290416

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_370 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_001377_430 0.2027132884 - - PREDICTED: laccase-6 [Jatropha curcas]
3 Hb_145655_010 0.2076719011 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
4 Hb_066778_010 0.2151267657 - - -
5 Hb_007810_090 0.224990574 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
6 Hb_007632_100 0.2578155219 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
7 Hb_004774_030 0.2665948779 - - PREDICTED: uncharacterized protein LOC105648177 [Jatropha curcas]
8 Hb_000174_050 0.2688322061 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
9 Hb_000100_060 0.270717383 - - PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Populus euphratica]
10 Hb_000011_410 0.2709876719 - - conserved hypothetical protein [Ricinus communis]
11 Hb_105959_010 0.2719680416 - - asparagine synthetase, putative [Ricinus communis]
12 Hb_001008_200 0.2756434007 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
13 Hb_000742_160 0.2808989218 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
14 Hb_107495_040 0.2847345214 - - PREDICTED: 12-oxophytodienoate reductase 2-like [Citrus sinensis]
15 Hb_009748_010 0.2856867799 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
16 Hb_001621_120 0.2868481041 - - Zeamatin precursor, putative [Ricinus communis]
17 Hb_001902_200 0.2878938985 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
18 Hb_024074_020 0.2884562702 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
19 Hb_000977_200 0.2918760253 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
20 Hb_000252_220 0.2920651929 - - PREDICTED: copper amine oxidase 1-like isoform X2 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_005539_370 Hb_005539_370 Hb_001377_430 Hb_001377_430 Hb_005539_370--Hb_001377_430 Hb_145655_010 Hb_145655_010 Hb_005539_370--Hb_145655_010 Hb_066778_010 Hb_066778_010 Hb_005539_370--Hb_066778_010 Hb_007810_090 Hb_007810_090 Hb_005539_370--Hb_007810_090 Hb_007632_100 Hb_007632_100 Hb_005539_370--Hb_007632_100 Hb_004774_030 Hb_004774_030 Hb_005539_370--Hb_004774_030 Hb_001621_120 Hb_001621_120 Hb_001377_430--Hb_001621_120 Hb_001377_430--Hb_007810_090 Hb_009748_010 Hb_009748_010 Hb_001377_430--Hb_009748_010 Hb_105959_010 Hb_105959_010 Hb_001377_430--Hb_105959_010 Hb_000100_060 Hb_000100_060 Hb_001377_430--Hb_000100_060 Hb_022174_010 Hb_022174_010 Hb_145655_010--Hb_022174_010 Hb_000424_080 Hb_000424_080 Hb_145655_010--Hb_000424_080 Hb_000174_050 Hb_000174_050 Hb_145655_010--Hb_000174_050 Hb_000522_140 Hb_000522_140 Hb_145655_010--Hb_000522_140 Hb_004225_110 Hb_004225_110 Hb_145655_010--Hb_004225_110 Hb_053709_040 Hb_053709_040 Hb_066778_010--Hb_053709_040 Hb_001366_170 Hb_001366_170 Hb_066778_010--Hb_001366_170 Hb_001902_200 Hb_001902_200 Hb_066778_010--Hb_001902_200 Hb_007483_060 Hb_007483_060 Hb_066778_010--Hb_007483_060 Hb_066778_010--Hb_007632_100 Hb_031284_030 Hb_031284_030 Hb_066778_010--Hb_031284_030 Hb_007810_090--Hb_000100_060 Hb_000742_160 Hb_000742_160 Hb_007810_090--Hb_000742_160 Hb_007810_090--Hb_007632_100 Hb_007810_090--Hb_066778_010 Hb_007632_100--Hb_053709_040 Hb_024074_020 Hb_024074_020 Hb_007632_100--Hb_024074_020 Hb_003207_150 Hb_003207_150 Hb_007632_100--Hb_003207_150 Hb_007632_100--Hb_001366_170 Hb_003058_230 Hb_003058_230 Hb_007632_100--Hb_003058_230 Hb_002660_110 Hb_002660_110 Hb_007632_100--Hb_002660_110 Hb_000960_090 Hb_000960_090 Hb_004774_030--Hb_000960_090 Hb_003813_060 Hb_003813_060 Hb_004774_030--Hb_003813_060 Hb_001080_050 Hb_001080_050 Hb_004774_030--Hb_001080_050 Hb_004774_030--Hb_001902_200 Hb_000566_130 Hb_000566_130 Hb_004774_030--Hb_000566_130 Hb_000668_060 Hb_000668_060 Hb_004774_030--Hb_000668_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.287366 0 0.519914 1.06601 0.102569 0.0937232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.153321 0.282781 0.0462084 0.0785878

CAGE analysis