Hb_005541_010

Information

Type -
Description -
Location Contig5541: 7165-9063
Sequence    

Annotation

kegg
ID rcu:RCOM_0574940
description hypothetical protein
nr
ID XP_012066198.1
description PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L349
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23774 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005541_010 0.0 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
2 Hb_140506_010 0.0641327389 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
3 Hb_005016_160 0.0653340714 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
4 Hb_003052_140 0.0700125139 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
5 Hb_000334_220 0.0712212538 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
6 Hb_012564_030 0.0754984245 - - coronatine-insensitive 1 [Hevea brasiliensis]
7 Hb_002411_030 0.0770047604 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
8 Hb_000049_260 0.0773062989 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000479_220 0.0790466774 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
10 Hb_000260_180 0.0817391105 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
11 Hb_000868_110 0.0817421408 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
12 Hb_021576_110 0.0820030304 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
13 Hb_001818_070 0.0829290926 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_005675_040 0.0837930788 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
15 Hb_011491_010 0.0841374015 - - Protein YME1, putative [Ricinus communis]
16 Hb_008511_090 0.0847468772 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
17 Hb_000070_080 0.0861736176 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
18 Hb_004109_030 0.0881138994 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000125_170 0.0882002618 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
20 Hb_003082_010 0.088438904 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]

Gene co-expression network

sample Hb_005541_010 Hb_005541_010 Hb_140506_010 Hb_140506_010 Hb_005541_010--Hb_140506_010 Hb_005016_160 Hb_005016_160 Hb_005541_010--Hb_005016_160 Hb_003052_140 Hb_003052_140 Hb_005541_010--Hb_003052_140 Hb_000334_220 Hb_000334_220 Hb_005541_010--Hb_000334_220 Hb_012564_030 Hb_012564_030 Hb_005541_010--Hb_012564_030 Hb_002411_030 Hb_002411_030 Hb_005541_010--Hb_002411_030 Hb_001818_070 Hb_001818_070 Hb_140506_010--Hb_001818_070 Hb_021576_110 Hb_021576_110 Hb_140506_010--Hb_021576_110 Hb_000049_260 Hb_000049_260 Hb_140506_010--Hb_000049_260 Hb_000125_170 Hb_000125_170 Hb_140506_010--Hb_000125_170 Hb_004767_050 Hb_004767_050 Hb_140506_010--Hb_004767_050 Hb_005016_160--Hb_000334_220 Hb_012055_060 Hb_012055_060 Hb_005016_160--Hb_012055_060 Hb_005016_160--Hb_003052_140 Hb_005016_160--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_005016_160--Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_003052_140--Hb_000125_170 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_000334_220--Hb_003052_140 Hb_000334_220--Hb_012564_030 Hb_000334_220--Hb_000336_250 Hb_000479_220 Hb_000479_220 Hb_000334_220--Hb_000479_220 Hb_048219_010 Hb_048219_010 Hb_012564_030--Hb_048219_010 Hb_001856_230 Hb_001856_230 Hb_012564_030--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_012564_030--Hb_003544_110 Hb_000331_670 Hb_000331_670 Hb_012564_030--Hb_000331_670 Hb_012564_030--Hb_012055_060 Hb_000983_090 Hb_000983_090 Hb_002411_030--Hb_000983_090 Hb_005137_050 Hb_005137_050 Hb_002411_030--Hb_005137_050 Hb_001728_050 Hb_001728_050 Hb_002411_030--Hb_001728_050 Hb_000130_240 Hb_000130_240 Hb_002411_030--Hb_000130_240 Hb_002411_030--Hb_005675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9606 20.2583 9.45796 10.3332 13.404 11.6749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.53091 13.1112 13.3219 6.20723 6.35067

CAGE analysis