Hb_005542_010

Information

Type -
Description -
Location Contig5542: 5305-6468
Sequence    

Annotation

kegg
ID tcc:TCM_021447
description hypothetical protein
nr
ID XP_007035919.1
description Uncharacterized protein TCM_021447 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EP83
description Uncharacterized protein OS=Theobroma cacao GN=TCM_021447 PE=4 SV=1
Gene Ontology
ID GO:0003676
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_010 0.0 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
2 Hb_010565_030 0.0706165255 - - hypothetical protein VITISV_006810 [Vitis vinifera]
3 Hb_011472_050 0.1063235418 - - -
4 Hb_002110_110 0.112752989 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
5 Hb_011609_210 0.1226330188 - - Uncharacterized protein TCM_011393 [Theobroma cacao]
6 Hb_000173_110 0.1364770234 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
7 Hb_009434_060 0.1399338767 - - T4.15 [Malus x robusta]
8 Hb_000032_020 0.1407464573 - - Centromeric protein E, putative [Ricinus communis]
9 Hb_001405_230 0.1427255571 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
10 Hb_003786_010 0.1474156223 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
11 Hb_000879_030 0.1480587712 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
12 Hb_000406_190 0.1499617058 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_065525_070 0.151259573 - - unnamed protein product [Homo sapiens]
14 Hb_001476_090 0.1525787579 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
15 Hb_000820_100 0.1549424114 - - RNA-directed DNA polymerase [Arachis hypogaea]
16 Hb_001366_260 0.1551347334 - - T4.15 [Malus x robusta]
17 Hb_003007_030 0.1586137981 - - -
18 Hb_042463_060 0.1596629571 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000365_220 0.1598536265 - - protein phosphatase-1, putative [Ricinus communis]
20 Hb_001514_150 0.1611992253 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_005542_010 Hb_005542_010 Hb_010565_030 Hb_010565_030 Hb_005542_010--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_005542_010--Hb_011472_050 Hb_002110_110 Hb_002110_110 Hb_005542_010--Hb_002110_110 Hb_011609_210 Hb_011609_210 Hb_005542_010--Hb_011609_210 Hb_000173_110 Hb_000173_110 Hb_005542_010--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_005542_010--Hb_009434_060 Hb_010565_030--Hb_011472_050 Hb_010565_030--Hb_000173_110 Hb_010565_030--Hb_011609_210 Hb_000123_340 Hb_000123_340 Hb_010565_030--Hb_000123_340 Hb_010565_030--Hb_002110_110 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_011472_050--Hb_000173_110 Hb_011472_050--Hb_009434_060 Hb_000032_020 Hb_000032_020 Hb_002110_110--Hb_000032_020 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_002110_110--Hb_011472_050 Hb_012404_080 Hb_012404_080 Hb_011609_210--Hb_012404_080 Hb_000977_150 Hb_000977_150 Hb_011609_210--Hb_000977_150 Hb_000454_160 Hb_000454_160 Hb_011609_210--Hb_000454_160 Hb_018272_050 Hb_018272_050 Hb_011609_210--Hb_018272_050 Hb_000173_110--Hb_000123_340 Hb_000173_110--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000173_110--Hb_000820_100 Hb_116784_020 Hb_116784_020 Hb_000173_110--Hb_116784_020 Hb_009434_060--Hb_001366_260 Hb_009434_060--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_009434_060--Hb_007543_020 Hb_009434_060--Hb_116784_020 Hb_009434_060--Hb_000173_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37485 12.7677 7.31223 3.72846 1.01749 1.43836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.314248 0.741154 1.10468 8.56142 26.8205

CAGE analysis