Hb_005542_040

Information

Type transcription factor
Description TF Family: WRKY
Location Contig5542: 44438-46468
Sequence    

Annotation

kegg
ID rcu:RCOM_0688810
description WRKY transcription factor, putative
nr
ID XP_012091129.1
description PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
swissprot
ID Q9SHB5
description WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1
trembl
ID S5CH76
description Uncharacterized protein OS=Jatropha curcas GN=WRKY55 PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 55

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_040 0.0 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
2 Hb_107809_010 0.0606392272 - - JHL06P13.14 [Jatropha curcas]
3 Hb_007676_040 0.0823330581 - - cellulose synthase, putative [Ricinus communis]
4 Hb_005276_220 0.0847078238 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
5 Hb_001318_120 0.085151068 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
6 Hb_000108_090 0.0902639222 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
7 Hb_011472_020 0.092466794 - - PREDICTED: mucin-17-like [Jatropha curcas]
8 Hb_039022_020 0.0956043118 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
9 Hb_001634_080 0.0983961896 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_001345_010 0.0991639525 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
11 Hb_000521_360 0.1007769888 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
12 Hb_008783_020 0.1054063797 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
13 Hb_000403_110 0.1063564144 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
14 Hb_187991_010 0.1127410636 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
15 Hb_002960_010 0.1156975328 - - Zeamatin precursor, putative [Ricinus communis]
16 Hb_010519_020 0.1194115852 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
17 Hb_000359_280 0.1215002388 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
18 Hb_001565_010 0.1226469062 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
19 Hb_000501_110 0.1244685545 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
20 Hb_003842_010 0.1256772978 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005542_040 Hb_005542_040 Hb_107809_010 Hb_107809_010 Hb_005542_040--Hb_107809_010 Hb_007676_040 Hb_007676_040 Hb_005542_040--Hb_007676_040 Hb_005276_220 Hb_005276_220 Hb_005542_040--Hb_005276_220 Hb_001318_120 Hb_001318_120 Hb_005542_040--Hb_001318_120 Hb_000108_090 Hb_000108_090 Hb_005542_040--Hb_000108_090 Hb_011472_020 Hb_011472_020 Hb_005542_040--Hb_011472_020 Hb_001634_080 Hb_001634_080 Hb_107809_010--Hb_001634_080 Hb_008783_020 Hb_008783_020 Hb_107809_010--Hb_008783_020 Hb_107809_010--Hb_000108_090 Hb_107809_010--Hb_005276_220 Hb_000521_360 Hb_000521_360 Hb_107809_010--Hb_000521_360 Hb_001345_010 Hb_001345_010 Hb_007676_040--Hb_001345_010 Hb_000501_110 Hb_000501_110 Hb_007676_040--Hb_000501_110 Hb_007676_040--Hb_000108_090 Hb_007676_040--Hb_001634_080 Hb_007676_040--Hb_000521_360 Hb_005276_220--Hb_011472_020 Hb_000403_110 Hb_000403_110 Hb_005276_220--Hb_000403_110 Hb_005276_220--Hb_001318_120 Hb_175758_010 Hb_175758_010 Hb_005276_220--Hb_175758_010 Hb_010519_020 Hb_010519_020 Hb_005276_220--Hb_010519_020 Hb_001318_120--Hb_010519_020 Hb_001318_120--Hb_011472_020 Hb_001318_120--Hb_175758_010 Hb_001329_110 Hb_001329_110 Hb_001318_120--Hb_001329_110 Hb_001318_120--Hb_000403_110 Hb_000108_090--Hb_001634_080 Hb_001565_010 Hb_001565_010 Hb_000108_090--Hb_001565_010 Hb_094148_010 Hb_094148_010 Hb_000108_090--Hb_094148_010 Hb_011472_020--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_011472_020--Hb_001421_010 Hb_011472_020--Hb_000403_110 Hb_039022_020 Hb_039022_020 Hb_011472_020--Hb_039022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.13056 0.13589 0.0560224 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.251975 0.0802199

CAGE analysis