Hb_005542_090

Information

Type -
Description -
Location Contig5542: 80649-80915
Sequence    

Annotation

kegg
ID mus:103972725
description probable disease resistance protein At1g59620
nr
ID XP_010910479.1
description PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID A0A067DSC3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037447mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_090 0.0 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
2 Hb_179812_010 0.1511953624 - - TdcA1-ORF1-ORF2 [Daucus carota]
3 Hb_007083_020 0.1560417992 - - hypothetical protein F775_15403 [Aegilops tauschii]
4 Hb_010504_030 0.1731074387 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
5 Hb_000261_360 0.1762918004 - - unknown [Lotus japonicus]
6 Hb_003581_010 0.1853173096 - - hypothetical protein VITISV_004687 [Vitis vinifera]
7 Hb_000007_460 0.1878420653 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
8 Hb_068014_010 0.1905090035 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
9 Hb_013691_030 0.1907285365 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
10 Hb_128998_010 0.1944474153 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
11 Hb_000136_180 0.1985173977 - - ribosomal protein S28, putative [Ricinus communis]
12 Hb_001231_070 0.2031712628 - - -
13 Hb_116632_010 0.2056086739 - - unnamed protein product [Vitis vinifera]
14 Hb_000265_130 0.2082757894 - - -
15 Hb_183522_010 0.2094577393 - - Far upstream element-binding protein, putative [Ricinus communis]
16 Hb_106415_010 0.2124650685 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
17 Hb_112047_010 0.2126048342 - - -
18 Hb_000015_070 0.2136411023 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
19 Hb_003371_170 0.2147084361 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000176_120 0.2149873062 - - seryl-tRNA synthetase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005542_090 Hb_005542_090 Hb_179812_010 Hb_179812_010 Hb_005542_090--Hb_179812_010 Hb_007083_020 Hb_007083_020 Hb_005542_090--Hb_007083_020 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460 Hb_004195_230 Hb_004195_230 Hb_179812_010--Hb_004195_230 Hb_002388_010 Hb_002388_010 Hb_179812_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_179812_010--Hb_002687_080 Hb_178620_010 Hb_178620_010 Hb_179812_010--Hb_178620_010 Hb_150766_020 Hb_150766_020 Hb_179812_010--Hb_150766_020 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_068014_010 Hb_068014_010 Hb_007083_020--Hb_068014_010 Hb_106415_010 Hb_106415_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_019053_010 Hb_019053_010 Hb_007083_020--Hb_019053_010 Hb_128998_010 Hb_128998_010 Hb_010504_030--Hb_128998_010 Hb_000176_120 Hb_000176_120 Hb_010504_030--Hb_000176_120 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_000001_040 Hb_000001_040 Hb_010504_030--Hb_000001_040 Hb_000265_130 Hb_000265_130 Hb_010504_030--Hb_000265_130 Hb_010504_030--Hb_000007_460 Hb_000261_360--Hb_000265_130 Hb_000261_360--Hb_010504_030 Hb_000261_360--Hb_000176_120 Hb_000261_360--Hb_000001_040 Hb_166480_010 Hb_166480_010 Hb_000261_360--Hb_166480_010 Hb_008277_030 Hb_008277_030 Hb_000261_360--Hb_008277_030 Hb_003581_010--Hb_000001_040 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_003581_010--Hb_000265_130 Hb_003581_010--Hb_128998_010 Hb_003581_010--Hb_000007_460 Hb_116632_010 Hb_116632_010 Hb_003581_010--Hb_116632_010 Hb_000007_460--Hb_128998_010 Hb_007188_020 Hb_007188_020 Hb_000007_460--Hb_007188_020 Hb_013691_030 Hb_013691_030 Hb_000007_460--Hb_013691_030 Hb_000015_070 Hb_000015_070 Hb_000007_460--Hb_000015_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.98298 0.878625 0.63612 4.97479 1.09203 9.62839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5387 2.02789 0 1.32723 0

CAGE analysis