Hb_005542_110

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5542: 91560-95546
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID KDP44703.1
description hypothetical protein JCGZ_01203 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cc-nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_110 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
2 Hb_004055_100 0.0935873412 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
3 Hb_000684_010 0.0989229067 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_011174_100 0.1050197393 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_005333_100 0.1056146435 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000876_050 0.1062458574 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
7 Hb_000976_060 0.11038611 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_001454_160 0.1115415167 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
9 Hb_000120_980 0.114666237 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
10 Hb_022108_010 0.1229272104 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
11 Hb_001907_020 0.1357728752 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
12 Hb_007709_010 0.1373539105 - - -
13 Hb_152718_010 0.1380660541 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
14 Hb_002555_020 0.1398762013 - - Receptor-like protein kinase [Medicago truncatula]
15 Hb_000221_170 0.1428418952 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
16 Hb_003469_010 0.1477597444 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
17 Hb_003106_210 0.1514503714 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
18 Hb_011214_140 0.1529225614 - - Ran GTPase binding protein, putative [Ricinus communis]
19 Hb_000343_260 0.1538816398 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
20 Hb_010813_030 0.1541975671 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005542_110 Hb_005542_110 Hb_004055_100 Hb_004055_100 Hb_005542_110--Hb_004055_100 Hb_000684_010 Hb_000684_010 Hb_005542_110--Hb_000684_010 Hb_011174_100 Hb_011174_100 Hb_005542_110--Hb_011174_100 Hb_005333_100 Hb_005333_100 Hb_005542_110--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_005542_110--Hb_000876_050 Hb_000976_060 Hb_000976_060 Hb_005542_110--Hb_000976_060 Hb_022108_010 Hb_022108_010 Hb_004055_100--Hb_022108_010 Hb_004055_100--Hb_005333_100 Hb_001907_020 Hb_001907_020 Hb_004055_100--Hb_001907_020 Hb_000120_980 Hb_000120_980 Hb_004055_100--Hb_000120_980 Hb_004055_100--Hb_000684_010 Hb_000684_010--Hb_000120_980 Hb_000684_010--Hb_005333_100 Hb_000684_010--Hb_000876_050 Hb_001675_130 Hb_001675_130 Hb_000684_010--Hb_001675_130 Hb_007709_010 Hb_007709_010 Hb_000684_010--Hb_007709_010 Hb_011174_100--Hb_000876_050 Hb_011174_100--Hb_007709_010 Hb_000512_040 Hb_000512_040 Hb_011174_100--Hb_000512_040 Hb_001454_160 Hb_001454_160 Hb_011174_100--Hb_001454_160 Hb_011174_100--Hb_000684_010 Hb_005333_100--Hb_000120_980 Hb_005333_100--Hb_000976_060 Hb_001838_010 Hb_001838_010 Hb_005333_100--Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_005333_100--Hb_000255_020 Hb_000489_020 Hb_000489_020 Hb_005333_100--Hb_000489_020 Hb_000221_170 Hb_000221_170 Hb_000876_050--Hb_000221_170 Hb_000876_050--Hb_005333_100 Hb_000876_050--Hb_000120_980 Hb_010813_030 Hb_010813_030 Hb_000876_050--Hb_010813_030 Hb_152718_010 Hb_152718_010 Hb_000976_060--Hb_152718_010 Hb_000976_060--Hb_001454_160 Hb_000976_060--Hb_001838_010 Hb_001623_470 Hb_001623_470 Hb_000976_060--Hb_001623_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0111098 3.2349 0.184026 0.30182 0 0.00510544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0125897 0.0297223 0 2.24214 0.91103

CAGE analysis