Hb_005542_120

Information

Type -
Description -
Location Contig5542: 98605-102438
Sequence    

Annotation

kegg
ID rcu:RCOM_0690080
description ATP binding protein, putative (EC:1.3.1.74 2.7.11.16)
nr
ID XP_012091138.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
swissprot
ID Q9LZV7
description Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana GN=PXC2 PE=2 SV=1
trembl
ID A0A067JQ53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03315 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probably inactive leucine-rich repeat receptor-like protein kinase at3g28040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48435: 98125-102431 , PASA_asmbl_48436: 100213-100421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_120 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
2 Hb_001117_050 0.0603793582 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
3 Hb_000878_050 0.0608257777 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
4 Hb_011918_070 0.0770221968 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
5 Hb_000392_110 0.0815553709 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_001396_030 0.0824937606 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
7 Hb_000003_280 0.085882984 - - conserved hypothetical protein [Ricinus communis]
8 Hb_015048_020 0.090107924 - - PREDICTED: myb-like protein D [Jatropha curcas]
9 Hb_001794_040 0.0931844501 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
10 Hb_007904_280 0.0933404708 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
11 Hb_085962_010 0.0935611169 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
12 Hb_008221_200 0.0941913556 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
13 Hb_004435_020 0.0983613671 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
14 Hb_007811_020 0.0998192826 - - PREDICTED: expansin-A6 [Jatropha curcas]
15 Hb_000032_420 0.1006200058 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
16 Hb_053264_010 0.1007469923 - - beta glucosidase [Hevea brasiliensis]
17 Hb_004696_010 0.1014330051 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
18 Hb_001674_010 0.1019098874 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
19 Hb_008054_030 0.1020664349 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
20 Hb_000012_350 0.10321635 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]

Gene co-expression network

sample Hb_005542_120 Hb_005542_120 Hb_001117_050 Hb_001117_050 Hb_005542_120--Hb_001117_050 Hb_000878_050 Hb_000878_050 Hb_005542_120--Hb_000878_050 Hb_011918_070 Hb_011918_070 Hb_005542_120--Hb_011918_070 Hb_000392_110 Hb_000392_110 Hb_005542_120--Hb_000392_110 Hb_001396_030 Hb_001396_030 Hb_005542_120--Hb_001396_030 Hb_000003_280 Hb_000003_280 Hb_005542_120--Hb_000003_280 Hb_001794_040 Hb_001794_040 Hb_001117_050--Hb_001794_040 Hb_008054_030 Hb_008054_030 Hb_001117_050--Hb_008054_030 Hb_001117_050--Hb_000392_110 Hb_008221_200 Hb_008221_200 Hb_001117_050--Hb_008221_200 Hb_010164_030 Hb_010164_030 Hb_001117_050--Hb_010164_030 Hb_004435_020 Hb_004435_020 Hb_000878_050--Hb_004435_020 Hb_000878_050--Hb_000392_110 Hb_000878_050--Hb_000003_280 Hb_004223_060 Hb_004223_060 Hb_000878_050--Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_000878_050--Hb_007904_280 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010 Hb_000735_020 Hb_000735_020 Hb_011918_070--Hb_000735_020 Hb_004202_020 Hb_004202_020 Hb_000392_110--Hb_004202_020 Hb_000483_450 Hb_000483_450 Hb_000392_110--Hb_000483_450 Hb_003894_110 Hb_003894_110 Hb_000392_110--Hb_003894_110 Hb_001047_090 Hb_001047_090 Hb_000392_110--Hb_001047_090 Hb_085962_010 Hb_085962_010 Hb_001396_030--Hb_085962_010 Hb_027506_030 Hb_027506_030 Hb_001396_030--Hb_027506_030 Hb_000112_080 Hb_000112_080 Hb_001396_030--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_001396_030--Hb_007218_040 Hb_000303_060 Hb_000303_060 Hb_001396_030--Hb_000303_060 Hb_010962_020 Hb_010962_020 Hb_000003_280--Hb_010962_020 Hb_053264_010 Hb_053264_010 Hb_000003_280--Hb_053264_010 Hb_000103_450 Hb_000103_450 Hb_000003_280--Hb_000103_450 Hb_001898_040 Hb_001898_040 Hb_000003_280--Hb_001898_040 Hb_006846_040 Hb_006846_040 Hb_000003_280--Hb_006846_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102255 3.77326 17.2272 30.579 0.0670888 0.0254856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0102993 0 2.6579 15.034

CAGE analysis