Hb_005542_130

Information

Type -
Description -
Location Contig5542: 107859-113034
Sequence    

Annotation

kegg
ID rcu:RCOM_0690090
description hypothetical protein
nr
ID XP_012091139.1
description PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03316 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48437: 108059-112793 , PASA_asmbl_48439: 112245-113028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_130 0.0 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
2 Hb_003159_140 0.066152104 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000757_030 0.0725303175 - - radical sam protein, putative [Ricinus communis]
4 Hb_002374_230 0.0786239488 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
5 Hb_003292_030 0.0800522718 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
6 Hb_001623_270 0.0807317243 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
7 Hb_000789_320 0.084125943 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
8 Hb_000816_250 0.0846307897 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
9 Hb_002889_010 0.0866722489 - - ubx domain-containing, putative [Ricinus communis]
10 Hb_030414_040 0.0868143476 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
11 Hb_003513_010 0.0871456029 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
12 Hb_001186_090 0.0884833072 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
13 Hb_000245_220 0.0885875615 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
14 Hb_005000_170 0.0886637565 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
15 Hb_000075_040 0.0892610399 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
16 Hb_000749_010 0.0894106884 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
17 Hb_002400_340 0.0897220014 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
18 Hb_000254_100 0.0897813223 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
19 Hb_006483_110 0.0900818619 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
20 Hb_001153_210 0.0912376138 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005542_130 Hb_005542_130 Hb_003159_140 Hb_003159_140 Hb_005542_130--Hb_003159_140 Hb_000757_030 Hb_000757_030 Hb_005542_130--Hb_000757_030 Hb_002374_230 Hb_002374_230 Hb_005542_130--Hb_002374_230 Hb_003292_030 Hb_003292_030 Hb_005542_130--Hb_003292_030 Hb_001623_270 Hb_001623_270 Hb_005542_130--Hb_001623_270 Hb_000789_320 Hb_000789_320 Hb_005542_130--Hb_000789_320 Hb_001040_100 Hb_001040_100 Hb_003159_140--Hb_001040_100 Hb_000329_800 Hb_000329_800 Hb_003159_140--Hb_000329_800 Hb_002889_010 Hb_002889_010 Hb_003159_140--Hb_002889_010 Hb_001153_210 Hb_001153_210 Hb_003159_140--Hb_001153_210 Hb_000035_470 Hb_000035_470 Hb_003159_140--Hb_000035_470 Hb_000300_180 Hb_000300_180 Hb_000757_030--Hb_000300_180 Hb_000254_100 Hb_000254_100 Hb_000757_030--Hb_000254_100 Hb_000304_070 Hb_000304_070 Hb_000757_030--Hb_000304_070 Hb_003363_070 Hb_003363_070 Hb_000757_030--Hb_003363_070 Hb_010931_070 Hb_010931_070 Hb_000757_030--Hb_010931_070 Hb_003093_040 Hb_003093_040 Hb_002374_230--Hb_003093_040 Hb_002374_230--Hb_003159_140 Hb_000175_410 Hb_000175_410 Hb_002374_230--Hb_000175_410 Hb_030414_040 Hb_030414_040 Hb_002374_230--Hb_030414_040 Hb_001158_160 Hb_001158_160 Hb_002374_230--Hb_001158_160 Hb_012055_030 Hb_012055_030 Hb_003292_030--Hb_012055_030 Hb_000075_040 Hb_000075_040 Hb_003292_030--Hb_000075_040 Hb_003292_030--Hb_003159_140 Hb_004846_220 Hb_004846_220 Hb_003292_030--Hb_004846_220 Hb_001247_310 Hb_001247_310 Hb_003292_030--Hb_001247_310 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_183433_010 Hb_183433_010 Hb_001623_270--Hb_183433_010 Hb_001623_270--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_000789_320--Hb_171900_090 Hb_000339_040 Hb_000339_040 Hb_000789_320--Hb_000339_040 Hb_001025_090 Hb_001025_090 Hb_000789_320--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_000789_320--Hb_000866_310 Hb_000789_320--Hb_001153_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4633 3.5565 8.65871 3.67658 4.25442 4.56245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.49147 5.67725 3.15316 6.51486 6.57867

CAGE analysis