Hb_005542_170

Information

Type -
Description -
Location Contig5542: 136834-145110
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_170 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_025528_010 0.0365464695 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
3 Hb_002249_200 0.0473030371 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
4 Hb_005031_010 0.0826387613 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_101624_010 0.0826992687 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_033095_050 0.0887934757 - - hypothetical protein VITISV_038692 [Vitis vinifera]
7 Hb_001244_030 0.1237684242 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_028527_010 0.1408956444 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_002400_430 0.1747479673 - - -
10 Hb_002800_020 0.1832309079 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000668_210 0.1996447234 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
12 Hb_035484_010 0.210539085 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
13 Hb_000148_010 0.2115073863 - - -
14 Hb_001072_060 0.2145579738 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
15 Hb_007924_040 0.2156061449 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
16 Hb_003683_100 0.2157927409 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000474_020 0.2161562394 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
18 Hb_029154_020 0.2235903181 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_029793_020 0.2236308492 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_002223_010 0.2237669793 - - hypothetical protein VITISV_009489 [Vitis vinifera]

Gene co-expression network

sample Hb_005542_170 Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_005542_170--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_005542_170--Hb_002249_200 Hb_005031_010 Hb_005031_010 Hb_005542_170--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_005542_170--Hb_101624_010 Hb_033095_050 Hb_033095_050 Hb_005542_170--Hb_033095_050 Hb_001244_030 Hb_001244_030 Hb_005542_170--Hb_001244_030 Hb_025528_010--Hb_002249_200 Hb_025528_010--Hb_001244_030 Hb_025528_010--Hb_033095_050 Hb_028527_010 Hb_028527_010 Hb_025528_010--Hb_028527_010 Hb_025528_010--Hb_005031_010 Hb_002249_200--Hb_001244_030 Hb_002249_200--Hb_028527_010 Hb_002249_200--Hb_033095_050 Hb_002249_200--Hb_005031_010 Hb_005031_010--Hb_101624_010 Hb_005031_010--Hb_033095_050 Hb_002400_430 Hb_002400_430 Hb_005031_010--Hb_002400_430 Hb_101624_010--Hb_033095_050 Hb_101624_010--Hb_025528_010 Hb_101624_010--Hb_002400_430 Hb_101624_010--Hb_002249_200 Hb_002800_020 Hb_002800_020 Hb_033095_050--Hb_002800_020 Hb_001244_030--Hb_028527_010 Hb_001244_030--Hb_033095_050 Hb_000474_020 Hb_000474_020 Hb_001244_030--Hb_000474_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.015245 0 0.00603551 0.049071

CAGE analysis