Hb_005545_030

Information

Type -
Description -
Location Contig5545: 46862-48998
Sequence    

Annotation

kegg
ID vvi:100243287
description uncharacterized LOC100243287
nr
ID XP_012086757.1
description PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01205 PE=4 SV=1
Gene Ontology
ID GO:0005488
description arm repeat superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48452: 47034-47645 , PASA_asmbl_48453: 47992-48922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005545_030 0.0 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
2 Hb_002681_040 0.0999759644 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
3 Hb_004046_040 0.1066137925 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
4 Hb_003018_110 0.1303853903 - - -
5 Hb_006452_190 0.1387457343 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
6 Hb_006096_040 0.1401472258 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
7 Hb_001405_050 0.1498581903 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
8 Hb_001386_130 0.1584959007 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
9 Hb_073973_170 0.1602392985 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
10 Hb_000680_150 0.1612235735 - - PREDICTED: protein STU1-like [Jatropha curcas]
11 Hb_006501_150 0.1612918494 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001514_020 0.1626592938 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
13 Hb_004204_030 0.1656148233 - - unknown [Populus trichocarpa]
14 Hb_000699_110 0.1671203402 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
15 Hb_003688_100 0.1682309918 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
16 Hb_000438_170 0.1690138312 - - -
17 Hb_010449_020 0.1697873793 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
18 Hb_003057_050 0.1726891584 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
19 Hb_010883_210 0.1732018912 - - PREDICTED: selenoprotein K [Jatropha curcas]
20 Hb_003640_060 0.1738620299 - - transferase, transferring glycosyl groups, putative [Ricinus communis]

Gene co-expression network

sample Hb_005545_030 Hb_005545_030 Hb_002681_040 Hb_002681_040 Hb_005545_030--Hb_002681_040 Hb_004046_040 Hb_004046_040 Hb_005545_030--Hb_004046_040 Hb_003018_110 Hb_003018_110 Hb_005545_030--Hb_003018_110 Hb_006452_190 Hb_006452_190 Hb_005545_030--Hb_006452_190 Hb_006096_040 Hb_006096_040 Hb_005545_030--Hb_006096_040 Hb_001405_050 Hb_001405_050 Hb_005545_030--Hb_001405_050 Hb_002681_040--Hb_001405_050 Hb_010449_020 Hb_010449_020 Hb_002681_040--Hb_010449_020 Hb_000768_050 Hb_000768_050 Hb_002681_040--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_002681_040--Hb_003688_100 Hb_000680_150 Hb_000680_150 Hb_002681_040--Hb_000680_150 Hb_004046_040--Hb_006096_040 Hb_006501_150 Hb_006501_150 Hb_004046_040--Hb_006501_150 Hb_000789_090 Hb_000789_090 Hb_004046_040--Hb_000789_090 Hb_004046_040--Hb_002681_040 Hb_004046_040--Hb_001405_050 Hb_003018_110--Hb_002681_040 Hb_003018_110--Hb_000680_150 Hb_073973_170 Hb_073973_170 Hb_003018_110--Hb_073973_170 Hb_003018_110--Hb_004046_040 Hb_002918_280 Hb_002918_280 Hb_003018_110--Hb_002918_280 Hb_000183_070 Hb_000183_070 Hb_006452_190--Hb_000183_070 Hb_005714_040 Hb_005714_040 Hb_006452_190--Hb_005714_040 Hb_001437_300 Hb_001437_300 Hb_006452_190--Hb_001437_300 Hb_005271_070 Hb_005271_070 Hb_006452_190--Hb_005271_070 Hb_005015_010 Hb_005015_010 Hb_006452_190--Hb_005015_010 Hb_011537_040 Hb_011537_040 Hb_006452_190--Hb_011537_040 Hb_000933_150 Hb_000933_150 Hb_006096_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_000482_110 Hb_000482_110 Hb_006096_040--Hb_000482_110 Hb_000331_290 Hb_000331_290 Hb_006096_040--Hb_000331_290 Hb_143766_090 Hb_143766_090 Hb_001405_050--Hb_143766_090 Hb_001776_090 Hb_001776_090 Hb_001405_050--Hb_001776_090 Hb_019962_030 Hb_019962_030 Hb_001405_050--Hb_019962_030 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_000538_020 Hb_000538_020 Hb_001405_050--Hb_000538_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.0989 6.66474 20.5197 5.14484 51.7629 31.6121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.3155 55.5561 6.24616 10.9824 4.18088

CAGE analysis