Hb_005545_100

Information

Type -
Description -
Location Contig5545: 127852-134943
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07320g
description POPTRDRAFT_765621; hypothetical protein
nr
ID XP_012086725.1
description PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8E1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01201 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48455: 127899-134921 , PASA_asmbl_48460: 106132-130249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005545_100 0.0 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
2 Hb_001504_330 0.0953188468 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
3 Hb_002284_200 0.0983271027 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
4 Hb_008566_050 0.0992001798 - - phosphoglycerate mutase, putative [Ricinus communis]
5 Hb_136509_010 0.0992023098 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
6 Hb_022250_060 0.0998081945 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
7 Hb_002217_020 0.1000201617 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
8 Hb_027393_030 0.1007364983 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
9 Hb_001013_030 0.1034637035 - - GTP-binding protein yptv3, putative [Ricinus communis]
10 Hb_003349_090 0.103537501 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
11 Hb_000424_200 0.1051222204 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
12 Hb_010812_120 0.1064845853 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
13 Hb_000748_130 0.1068916734 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
14 Hb_009339_030 0.1104708651 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
15 Hb_004705_080 0.112371883 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
16 Hb_007317_010 0.1130828044 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000111_450 0.1136044597 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
18 Hb_000309_130 0.1162569068 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
19 Hb_001314_070 0.1166699564 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012760_070 0.116922128 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_005545_100 Hb_005545_100 Hb_001504_330 Hb_001504_330 Hb_005545_100--Hb_001504_330 Hb_002284_200 Hb_002284_200 Hb_005545_100--Hb_002284_200 Hb_008566_050 Hb_008566_050 Hb_005545_100--Hb_008566_050 Hb_136509_010 Hb_136509_010 Hb_005545_100--Hb_136509_010 Hb_022250_060 Hb_022250_060 Hb_005545_100--Hb_022250_060 Hb_002217_020 Hb_002217_020 Hb_005545_100--Hb_002217_020 Hb_000603_080 Hb_000603_080 Hb_001504_330--Hb_000603_080 Hb_002799_040 Hb_002799_040 Hb_001504_330--Hb_002799_040 Hb_000007_140 Hb_000007_140 Hb_001504_330--Hb_000007_140 Hb_031910_020 Hb_031910_020 Hb_001504_330--Hb_031910_020 Hb_000367_260 Hb_000367_260 Hb_001504_330--Hb_000367_260 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040 Hb_019263_020 Hb_019263_020 Hb_002284_200--Hb_019263_020 Hb_000748_130 Hb_000748_130 Hb_002284_200--Hb_000748_130 Hb_001279_340 Hb_001279_340 Hb_002284_200--Hb_001279_340 Hb_000563_250 Hb_000563_250 Hb_002284_200--Hb_000563_250 Hb_000111_450 Hb_000111_450 Hb_002284_200--Hb_000111_450 Hb_000366_090 Hb_000366_090 Hb_002284_200--Hb_000366_090 Hb_000039_160 Hb_000039_160 Hb_008566_050--Hb_000039_160 Hb_000117_090 Hb_000117_090 Hb_008566_050--Hb_000117_090 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_000155_200 Hb_000155_200 Hb_008566_050--Hb_000155_200 Hb_004705_080 Hb_004705_080 Hb_008566_050--Hb_004705_080 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130 Hb_136509_010--Hb_002217_020 Hb_001159_110 Hb_001159_110 Hb_136509_010--Hb_001159_110 Hb_004453_050 Hb_004453_050 Hb_136509_010--Hb_004453_050 Hb_001633_210 Hb_001633_210 Hb_136509_010--Hb_001633_210 Hb_003349_090 Hb_003349_090 Hb_136509_010--Hb_003349_090 Hb_007317_010 Hb_007317_010 Hb_022250_060--Hb_007317_010 Hb_000221_190 Hb_000221_190 Hb_022250_060--Hb_000221_190 Hb_000926_090 Hb_000926_090 Hb_022250_060--Hb_000926_090 Hb_004162_130 Hb_004162_130 Hb_022250_060--Hb_004162_130 Hb_022250_060--Hb_002217_020 Hb_000393_020 Hb_000393_020 Hb_022250_060--Hb_000393_020 Hb_002217_020--Hb_007317_010 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_001856_200 Hb_001856_200 Hb_002217_020--Hb_001856_200 Hb_000164_020 Hb_000164_020 Hb_002217_020--Hb_000164_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34899 3.71029 4.24451 3.70773 1.00599 3.02388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91666 7.22578 9.03454 3.02971 2.49996

CAGE analysis