Hb_005548_010

Information

Type -
Description -
Location Contig5548: 14209-29016
Sequence    

Annotation

kegg
ID pmum:103324670
description DNA repair protein RAD51 homolog 2
nr
ID XP_012064919.1
description PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
swissprot
ID Q9SK02
description DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana GN=RAD51B PE=2 SV=2
trembl
ID A0A067L6T9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05604 PE=4 SV=1
Gene Ontology
ID GO:0033063
description dna repair protein rad51 homolog 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48463: 12665-18963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005548_010 0.0 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
2 Hb_000221_270 0.0934281601 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
3 Hb_005625_020 0.1103088015 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
4 Hb_000069_460 0.1111161763 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
5 Hb_003687_240 0.1130673046 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
6 Hb_001635_060 0.1142195565 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
7 Hb_000365_020 0.1148616259 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
8 Hb_000898_040 0.1171482847 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000207_250 0.1185711124 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
10 Hb_000617_260 0.1198011613 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
11 Hb_019654_190 0.1200463574 - - protein kinase, putative [Ricinus communis]
12 Hb_001789_090 0.1211242296 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
13 Hb_000291_110 0.1217041326 - - eukaryotic translation initiation factor [Hevea brasiliensis]
14 Hb_003893_010 0.1227893533 - - hypothetical protein M569_16374 [Genlisea aurea]
15 Hb_002769_050 0.1233560293 - - PREDICTED: endophilin-A1 [Jatropha curcas]
16 Hb_007765_020 0.1246022189 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
17 Hb_002217_300 0.1259340991 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
18 Hb_001248_130 0.1278455148 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
19 Hb_061090_010 0.1279636984 - - RAN BINDING protein 1 [Populus trichocarpa]
20 Hb_000041_050 0.1282370732 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_005548_010 Hb_005548_010 Hb_000221_270 Hb_000221_270 Hb_005548_010--Hb_000221_270 Hb_005625_020 Hb_005625_020 Hb_005548_010--Hb_005625_020 Hb_000069_460 Hb_000069_460 Hb_005548_010--Hb_000069_460 Hb_003687_240 Hb_003687_240 Hb_005548_010--Hb_003687_240 Hb_001635_060 Hb_001635_060 Hb_005548_010--Hb_001635_060 Hb_000365_020 Hb_000365_020 Hb_005548_010--Hb_000365_020 Hb_008066_010 Hb_008066_010 Hb_000221_270--Hb_008066_010 Hb_000221_270--Hb_000069_460 Hb_002902_110 Hb_002902_110 Hb_000221_270--Hb_002902_110 Hb_000051_110 Hb_000051_110 Hb_000221_270--Hb_000051_110 Hb_010710_030 Hb_010710_030 Hb_000221_270--Hb_010710_030 Hb_000080_190 Hb_000080_190 Hb_005625_020--Hb_000080_190 Hb_002687_110 Hb_002687_110 Hb_005625_020--Hb_002687_110 Hb_002769_050 Hb_002769_050 Hb_005625_020--Hb_002769_050 Hb_004738_040 Hb_004738_040 Hb_005625_020--Hb_004738_040 Hb_000898_040 Hb_000898_040 Hb_005625_020--Hb_000898_040 Hb_154648_010 Hb_154648_010 Hb_005625_020--Hb_154648_010 Hb_000069_460--Hb_008066_010 Hb_000110_160 Hb_000110_160 Hb_000069_460--Hb_000110_160 Hb_001329_300 Hb_001329_300 Hb_000069_460--Hb_001329_300 Hb_000069_460--Hb_000051_110 Hb_000446_090 Hb_000446_090 Hb_000069_460--Hb_000446_090 Hb_010883_090 Hb_010883_090 Hb_003687_240--Hb_010883_090 Hb_002631_060 Hb_002631_060 Hb_003687_240--Hb_002631_060 Hb_000805_020 Hb_000805_020 Hb_003687_240--Hb_000805_020 Hb_007747_200 Hb_007747_200 Hb_003687_240--Hb_007747_200 Hb_000696_040 Hb_000696_040 Hb_003687_240--Hb_000696_040 Hb_021596_040 Hb_021596_040 Hb_003687_240--Hb_021596_040 Hb_001898_220 Hb_001898_220 Hb_001635_060--Hb_001898_220 Hb_011485_070 Hb_011485_070 Hb_001635_060--Hb_011485_070 Hb_000185_040 Hb_000185_040 Hb_001635_060--Hb_000185_040 Hb_000656_110 Hb_000656_110 Hb_001635_060--Hb_000656_110 Hb_004218_110 Hb_004218_110 Hb_001635_060--Hb_004218_110 Hb_007441_230 Hb_007441_230 Hb_001635_060--Hb_007441_230 Hb_000365_020--Hb_000898_040 Hb_004046_020 Hb_004046_020 Hb_000365_020--Hb_004046_020 Hb_002217_300 Hb_002217_300 Hb_000365_020--Hb_002217_300 Hb_001344_010 Hb_001344_010 Hb_000365_020--Hb_001344_010 Hb_000169_090 Hb_000169_090 Hb_000365_020--Hb_000169_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2501 0.662734 0.364535 0.955633 1.19087 2.33652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60343 1.12488 3.47748 1.69501 0.421929

CAGE analysis