Hb_005548_030

Information

Type -
Description -
Location Contig5548: 43360-43581
Sequence    

Annotation

kegg
ID tcc:TCM_041991
description hypothetical protein
nr
ID KDP44139.1
description hypothetical protein JCGZ_05606 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LIR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05606 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005548_030 0.0 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
2 Hb_000692_120 0.1696787766 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
3 Hb_003119_050 0.184387967 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
4 Hb_001196_080 0.1860217043 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
5 Hb_005000_140 0.1928195391 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
6 Hb_074184_010 0.199126998 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
7 Hb_055488_020 0.1992481011 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
8 Hb_000012_210 0.2072534543 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
9 Hb_002609_190 0.2077319817 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
10 Hb_005394_010 0.2101014104 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
11 Hb_067197_030 0.2107494422 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
12 Hb_005054_310 0.2109163363 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
13 Hb_032990_020 0.2123370139 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027402_040 0.2125985794 - - Thioredoxin II, putative [Ricinus communis]
15 Hb_003228_030 0.212815461 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
16 Hb_000189_430 0.213408145 - - unnamed protein product [Vitis vinifera]
17 Hb_000890_010 0.2160964468 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012258_020 0.2166919598 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_032202_050 0.2172464988 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
20 Hb_005883_070 0.2177965526 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_005548_030 Hb_005548_030 Hb_000692_120 Hb_000692_120 Hb_005548_030--Hb_000692_120 Hb_003119_050 Hb_003119_050 Hb_005548_030--Hb_003119_050 Hb_001196_080 Hb_001196_080 Hb_005548_030--Hb_001196_080 Hb_005000_140 Hb_005000_140 Hb_005548_030--Hb_005000_140 Hb_074184_010 Hb_074184_010 Hb_005548_030--Hb_074184_010 Hb_055488_020 Hb_055488_020 Hb_005548_030--Hb_055488_020 Hb_000692_120--Hb_001196_080 Hb_005054_310 Hb_005054_310 Hb_000692_120--Hb_005054_310 Hb_000692_120--Hb_005000_140 Hb_003228_030 Hb_003228_030 Hb_000692_120--Hb_003228_030 Hb_000890_010 Hb_000890_010 Hb_000692_120--Hb_000890_010 Hb_000836_370 Hb_000836_370 Hb_000692_120--Hb_000836_370 Hb_027402_040 Hb_027402_040 Hb_003119_050--Hb_027402_040 Hb_003119_050--Hb_000890_010 Hb_003119_050--Hb_003228_030 Hb_013405_150 Hb_013405_150 Hb_003119_050--Hb_013405_150 Hb_091226_010 Hb_091226_010 Hb_003119_050--Hb_091226_010 Hb_000152_760 Hb_000152_760 Hb_003119_050--Hb_000152_760 Hb_000671_060 Hb_000671_060 Hb_001196_080--Hb_000671_060 Hb_069841_010 Hb_069841_010 Hb_001196_080--Hb_069841_010 Hb_003090_150 Hb_003090_150 Hb_001196_080--Hb_003090_150 Hb_001196_080--Hb_005054_310 Hb_002311_140 Hb_002311_140 Hb_001196_080--Hb_002311_140 Hb_156635_020 Hb_156635_020 Hb_005000_140--Hb_156635_020 Hb_000012_210 Hb_000012_210 Hb_005000_140--Hb_000012_210 Hb_152910_010 Hb_152910_010 Hb_005000_140--Hb_152910_010 Hb_004837_220 Hb_004837_220 Hb_005000_140--Hb_004837_220 Hb_005649_090 Hb_005649_090 Hb_005000_140--Hb_005649_090 Hb_001085_300 Hb_001085_300 Hb_005000_140--Hb_001085_300 Hb_008203_020 Hb_008203_020 Hb_074184_010--Hb_008203_020 Hb_029689_010 Hb_029689_010 Hb_074184_010--Hb_029689_010 Hb_065755_020 Hb_065755_020 Hb_074184_010--Hb_065755_020 Hb_032202_050 Hb_032202_050 Hb_074184_010--Hb_032202_050 Hb_000221_230 Hb_000221_230 Hb_074184_010--Hb_000221_230 Hb_004495_010 Hb_004495_010 Hb_074184_010--Hb_004495_010 Hb_002701_210 Hb_002701_210 Hb_055488_020--Hb_002701_210 Hb_003078_030 Hb_003078_030 Hb_055488_020--Hb_003078_030 Hb_055488_020--Hb_000012_210 Hb_001009_090 Hb_001009_090 Hb_055488_020--Hb_001009_090 Hb_005096_010 Hb_005096_010 Hb_055488_020--Hb_005096_010 Hb_000056_300 Hb_000056_300 Hb_055488_020--Hb_000056_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.3145 237.361 212.073 118.146 108.808 12.0522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67658 8.33177 15.0136 32.0397 13.0224

CAGE analysis