Hb_005550_070

Information

Type transcription factor
Description TF Family: WRKY
Location Contig5550: 90061-92600
Sequence    

Annotation

kegg
ID pop:POPTR_0001s33560g
description POPTRDRAFT_174550; hypothetical protein
nr
ID XP_011000970.1
description PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
swissprot
ID Q9FYA2
description Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1
trembl
ID B9GF44
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s33560g PE=4 SV=2
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 75

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48490: 90563-90855 , PASA_asmbl_48491: 90946-92416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005550_070 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
2 Hb_005846_010 0.0678597933 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
3 Hb_011628_030 0.0715259366 - - conserved hypothetical protein [Ricinus communis]
4 Hb_125876_010 0.0757611801 - - unnamed protein product [Vitis vinifera]
5 Hb_047163_010 0.0945803378 - - PREDICTED: periaxin-like [Populus euphratica]
6 Hb_004109_300 0.0960578392 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
7 Hb_156949_010 0.1003853438 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_004931_060 0.1011405696 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
9 Hb_000185_060 0.102477541 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
10 Hb_002917_020 0.1061348065 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
11 Hb_001168_080 0.1064827887 - - kinase, putative [Ricinus communis]
12 Hb_002743_030 0.1066680469 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
13 Hb_002603_020 0.1077103624 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
14 Hb_005993_070 0.107805195 - - lipid binding protein, putative [Ricinus communis]
15 Hb_032582_010 0.113356366 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_008053_070 0.1144861348 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
17 Hb_005731_080 0.1165662214 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_002677_010 0.116716556 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
19 Hb_001269_020 0.1180096786 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
20 Hb_181092_010 0.1187976032 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_005550_070 Hb_005550_070 Hb_005846_010 Hb_005846_010 Hb_005550_070--Hb_005846_010 Hb_011628_030 Hb_011628_030 Hb_005550_070--Hb_011628_030 Hb_125876_010 Hb_125876_010 Hb_005550_070--Hb_125876_010 Hb_047163_010 Hb_047163_010 Hb_005550_070--Hb_047163_010 Hb_004109_300 Hb_004109_300 Hb_005550_070--Hb_004109_300 Hb_156949_010 Hb_156949_010 Hb_005550_070--Hb_156949_010 Hb_005846_010--Hb_125876_010 Hb_005846_010--Hb_156949_010 Hb_002603_020 Hb_002603_020 Hb_005846_010--Hb_002603_020 Hb_001168_080 Hb_001168_080 Hb_005846_010--Hb_001168_080 Hb_005846_010--Hb_011628_030 Hb_011628_030--Hb_047163_010 Hb_059162_010 Hb_059162_010 Hb_011628_030--Hb_059162_010 Hb_011628_030--Hb_125876_010 Hb_004931_060 Hb_004931_060 Hb_011628_030--Hb_004931_060 Hb_002743_030 Hb_002743_030 Hb_011628_030--Hb_002743_030 Hb_125876_010--Hb_002743_030 Hb_125876_010--Hb_156949_010 Hb_125876_010--Hb_002603_020 Hb_125876_010--Hb_004109_300 Hb_047163_010--Hb_059162_010 Hb_047163_010--Hb_125876_010 Hb_047163_010--Hb_002743_030 Hb_047163_010--Hb_004109_300 Hb_047163_010--Hb_004931_060 Hb_004109_300--Hb_002743_030 Hb_000236_360 Hb_000236_360 Hb_004109_300--Hb_000236_360 Hb_004109_300--Hb_156949_010 Hb_003074_070 Hb_003074_070 Hb_004109_300--Hb_003074_070 Hb_156949_010--Hb_002603_020 Hb_181092_010 Hb_181092_010 Hb_156949_010--Hb_181092_010 Hb_004918_040 Hb_004918_040 Hb_156949_010--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_156949_010--Hb_003735_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0237916 65.2501 2.67087 2.24912 0.0238736 0.221468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0545486 0.386098 0.0786449 111.959 0.174755

CAGE analysis