Hb_005563_010

Information

Type -
Description -
Location Contig5563: 23921-35493
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12510g
description POPTRDRAFT_721903; hypothetical protein
nr
ID XP_012067192.1
description PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
swissprot
ID Q6S001
description Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1
trembl
ID A0A067LB84
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_26753 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-related protein 11 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48538: 24200-29427 , PASA_asmbl_48539: 29435-35609 , PASA_asmbl_48540: 29435-35484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005563_010 0.0 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
2 Hb_001976_030 0.0908330588 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
3 Hb_000049_180 0.0951468879 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
4 Hb_000086_210 0.0998689694 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001369_100 0.110861338 - - hypothetical protein JCGZ_26280 [Jatropha curcas]
6 Hb_000139_300 0.1166803267 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
7 Hb_001628_120 0.12419205 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
8 Hb_000096_190 0.1286606685 - - unknown [Lotus japonicus]
9 Hb_004306_110 0.1298496817 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
10 Hb_042083_040 0.1324086025 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000922_340 0.132932008 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
12 Hb_000152_440 0.1336371742 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
13 Hb_002759_120 0.1340938589 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000473_050 0.1367265818 - - chromatin regulatory protein sir2, putative [Ricinus communis]
15 Hb_000152_490 0.1378594152 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
16 Hb_005144_120 0.1414602794 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
17 Hb_000649_040 0.1415438953 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
18 Hb_002182_020 0.1423170573 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_000390_190 0.1433677628 - - ATP binding protein, putative [Ricinus communis]
20 Hb_002498_160 0.1434996666 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]

Gene co-expression network

sample Hb_005563_010 Hb_005563_010 Hb_001976_030 Hb_001976_030 Hb_005563_010--Hb_001976_030 Hb_000049_180 Hb_000049_180 Hb_005563_010--Hb_000049_180 Hb_000086_210 Hb_000086_210 Hb_005563_010--Hb_000086_210 Hb_001369_100 Hb_001369_100 Hb_005563_010--Hb_001369_100 Hb_000139_300 Hb_000139_300 Hb_005563_010--Hb_000139_300 Hb_001628_120 Hb_001628_120 Hb_005563_010--Hb_001628_120 Hb_001976_030--Hb_000049_180 Hb_001976_030--Hb_001628_120 Hb_042083_040 Hb_042083_040 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000049_180--Hb_001628_120 Hb_000049_160 Hb_000049_160 Hb_000049_180--Hb_000049_160 Hb_007441_310 Hb_007441_310 Hb_000049_180--Hb_007441_310 Hb_000096_190 Hb_000096_190 Hb_000049_180--Hb_000096_190 Hb_000049_180--Hb_042083_040 Hb_000086_210--Hb_000139_300 Hb_000152_440 Hb_000152_440 Hb_000086_210--Hb_000152_440 Hb_005074_040 Hb_005074_040 Hb_000086_210--Hb_005074_040 Hb_000749_020 Hb_000749_020 Hb_000086_210--Hb_000749_020 Hb_000935_040 Hb_000935_040 Hb_000086_210--Hb_000935_040 Hb_009079_050 Hb_009079_050 Hb_001369_100--Hb_009079_050 Hb_002817_040 Hb_002817_040 Hb_001369_100--Hb_002817_040 Hb_001369_100--Hb_001628_120 Hb_001369_100--Hb_000096_190 Hb_001369_100--Hb_000139_300 Hb_026549_070 Hb_026549_070 Hb_000139_300--Hb_026549_070 Hb_000139_300--Hb_005074_040 Hb_004306_110 Hb_004306_110 Hb_000139_300--Hb_004306_110 Hb_000139_300--Hb_009079_050 Hb_000808_150 Hb_000808_150 Hb_000139_300--Hb_000808_150 Hb_000684_390 Hb_000684_390 Hb_001628_120--Hb_000684_390 Hb_001628_120--Hb_042083_040 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05533 0.794897 10.9132 12.0171 1.29635 1.16935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48171 2.41891 3.32558 1.82312 13.0166

CAGE analysis