Hb_005563_040

Information

Type -
Description -
Location Contig5563: 79401-92397
Sequence    

Annotation

kegg
ID rcu:RCOM_1449190
description hypothetical protein
nr
ID XP_012067194.1
description PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L014
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26755 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48541: 81227-91921 , PASA_asmbl_48542: 92275-92493
cDNA
(Sanger)
(ID:Location)		 028_H04.ab1: 92278-92493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005563_040 0.0 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
2 Hb_000803_170 0.0790016578 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
3 Hb_005488_160 0.0917862433 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
4 Hb_002411_100 0.0957896344 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
5 Hb_000442_070 0.1010496575 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
6 Hb_001579_280 0.101601289 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
7 Hb_010557_010 0.1032933608 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
8 Hb_003948_020 0.1086900094 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
9 Hb_027298_020 0.1092554897 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
10 Hb_001300_130 0.1107102281 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
11 Hb_006829_080 0.1112933571 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
12 Hb_000703_070 0.1118164896 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
13 Hb_002811_310 0.113055226 - - hypothetical protein VITISV_025505 [Vitis vinifera]
14 Hb_007694_060 0.1175300201 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
15 Hb_000019_080 0.119662868 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
16 Hb_000005_130 0.1196668399 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
17 Hb_003494_030 0.1219668798 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
18 Hb_002232_380 0.1260902034 - - malate dehydrogenase, putative [Ricinus communis]
19 Hb_011114_020 0.1261412283 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
20 Hb_003549_140 0.1274951025 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005563_040 Hb_005563_040 Hb_000803_170 Hb_000803_170 Hb_005563_040--Hb_000803_170 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_002411_100 Hb_002411_100 Hb_005563_040--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_005563_040--Hb_000442_070 Hb_001579_280 Hb_001579_280 Hb_005563_040--Hb_001579_280 Hb_010557_010 Hb_010557_010 Hb_005563_040--Hb_010557_010 Hb_002811_250 Hb_002811_250 Hb_000803_170--Hb_002811_250 Hb_000803_170--Hb_010557_010 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_000803_170--Hb_001579_280 Hb_005488_160--Hb_002411_100 Hb_007694_060 Hb_007694_060 Hb_005488_160--Hb_007694_060 Hb_015175_040 Hb_015175_040 Hb_005488_160--Hb_015175_040 Hb_005488_160--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_005488_160--Hb_000703_070 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_002411_100--Hb_010557_010 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_000442_070--Hb_010557_010 Hb_011114_020 Hb_011114_020 Hb_000442_070--Hb_011114_020 Hb_000442_070--Hb_002411_100 Hb_006620_070 Hb_006620_070 Hb_000442_070--Hb_006620_070 Hb_000442_070--Hb_003948_020 Hb_000019_080 Hb_000019_080 Hb_001579_280--Hb_000019_080 Hb_004837_100 Hb_004837_100 Hb_001579_280--Hb_004837_100 Hb_001579_280--Hb_000089_140 Hb_002811_310 Hb_002811_310 Hb_001579_280--Hb_002811_310 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000703_070 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.687757 0.856473 9.86093 2.79448 0.398445 0.801695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44631 1.19921 1.66144 1.1449 14.279

CAGE analysis