Hb_005563_060

Information

Type -
Description -
Location Contig5563: 129869-135348
Sequence    

Annotation

kegg
ID rcu:RCOM_1449180
description coatomer alpha subunit, putative (EC:2.7.11.7)
nr
ID XP_012067196.1
description PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
swissprot
ID Q94A40
description Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=2 SV=2
trembl
ID A0A067L3H5
description Coatomer subunit alpha OS=Jatropha curcas GN=JCGZ_26756 PE=4 SV=1
Gene Ontology
ID GO:0030126
description coatomer subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48543: 129695-135242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005563_060 0.0 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
2 Hb_000037_220 0.0558711524 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
3 Hb_000003_100 0.0569663576 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
4 Hb_001377_350 0.0698434606 - - PREDICTED: exportin-2 [Jatropha curcas]
5 Hb_003216_090 0.072259484 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
6 Hb_000665_230 0.0735226506 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
7 Hb_012092_060 0.0736379512 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
8 Hb_000331_580 0.0747536485 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
9 Hb_003805_040 0.0759561011 - - Sacsin [Glycine soja]
10 Hb_001935_160 0.0769626791 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
11 Hb_001377_100 0.0782759182 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
12 Hb_000556_220 0.0790534872 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
13 Hb_009486_090 0.0805438507 - - RNA binding protein, putative [Ricinus communis]
14 Hb_000017_220 0.0808115003 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
15 Hb_015978_100 0.0823800995 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
16 Hb_001951_170 0.0832158535 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
17 Hb_004410_120 0.0833781922 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
18 Hb_004645_070 0.0836895389 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
19 Hb_001828_170 0.0848292069 - - PREDICTED: protein TPLATE [Jatropha curcas]
20 Hb_000941_030 0.0858831785 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]

Gene co-expression network

sample Hb_005563_060 Hb_005563_060 Hb_000037_220 Hb_000037_220 Hb_005563_060--Hb_000037_220 Hb_000003_100 Hb_000003_100 Hb_005563_060--Hb_000003_100 Hb_001377_350 Hb_001377_350 Hb_005563_060--Hb_001377_350 Hb_003216_090 Hb_003216_090 Hb_005563_060--Hb_003216_090 Hb_000665_230 Hb_000665_230 Hb_005563_060--Hb_000665_230 Hb_012092_060 Hb_012092_060 Hb_005563_060--Hb_012092_060 Hb_000556_220 Hb_000556_220 Hb_000037_220--Hb_000556_220 Hb_000037_220--Hb_000003_100 Hb_140049_080 Hb_140049_080 Hb_000037_220--Hb_140049_080 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010 Hb_000003_100--Hb_003216_090 Hb_000331_580 Hb_000331_580 Hb_000003_100--Hb_000331_580 Hb_002890_130 Hb_002890_130 Hb_000003_100--Hb_002890_130 Hb_012286_040 Hb_012286_040 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_000809_230 Hb_000809_230 Hb_001377_350--Hb_000809_230 Hb_002749_060 Hb_002749_060 Hb_001377_350--Hb_002749_060 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_003544_050 Hb_003544_050 Hb_001377_350--Hb_003544_050 Hb_001377_350--Hb_000003_100 Hb_001951_170 Hb_001951_170 Hb_003216_090--Hb_001951_170 Hb_003216_090--Hb_000331_580 Hb_000003_410 Hb_000003_410 Hb_003216_090--Hb_000003_410 Hb_003216_090--Hb_000665_230 Hb_001904_030 Hb_001904_030 Hb_003216_090--Hb_001904_030 Hb_011689_030 Hb_011689_030 Hb_000665_230--Hb_011689_030 Hb_003805_040 Hb_003805_040 Hb_000665_230--Hb_003805_040 Hb_009486_170 Hb_009486_170 Hb_000665_230--Hb_009486_170 Hb_000176_100 Hb_000176_100 Hb_000665_230--Hb_000176_100 Hb_001133_030 Hb_001133_030 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_003912_070 Hb_003912_070 Hb_012092_060--Hb_003912_070 Hb_000537_050 Hb_000537_050 Hb_012092_060--Hb_000537_050 Hb_005568_040 Hb_005568_040 Hb_012092_060--Hb_005568_040 Hb_012092_060--Hb_012286_040 Hb_012092_060--Hb_000003_100 Hb_011287_050 Hb_011287_050 Hb_012092_060--Hb_011287_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.315 56.654 26.8958 42.1767 23.824 37.3052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9285 12.5581 33.0946 44.6848 46.9181

CAGE analysis