Hb_005565_010

Information

Type -
Description -
Location Contig5565: 10584-13213
Sequence    

Annotation

kegg
ID cic:CICLE_v10024612mg
description hypothetical protein
nr
ID XP_006443419.1
description hypothetical protein CICLE_v10024612mg [Citrus clementina]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID V4VTZ9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024612mg PE=4 SV=1
Gene Ontology
ID GO:0044763
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005565_010 0.0 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
2 Hb_009355_030 0.1578599977 - - conserved hypothetical protein [Ricinus communis]
3 Hb_025306_010 0.1597880875 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
4 Hb_000340_010 0.1647814094 - - -
5 Hb_000987_130 0.1697241354 - - -
6 Hb_045046_010 0.1732147936 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
7 Hb_075449_020 0.177185143 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
8 Hb_155702_010 0.1837934216 - - Tetraspanin-5 [Gossypium arboreum]
9 Hb_000976_380 0.1888560414 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
10 Hb_183510_010 0.1893751336 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
11 Hb_000465_310 0.1895284435 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002849_080 0.1922210688 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
13 Hb_003106_150 0.1947180417 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
14 Hb_001662_030 0.1970879902 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
15 Hb_010128_090 0.1990799699 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
16 Hb_001769_010 0.2000785327 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001220_030 0.200088235 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
18 Hb_006588_090 0.201094326 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
19 Hb_000336_140 0.2012967316 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002977_010 0.2020855838 - - PREDICTED: F-box protein GID2 [Jatropha curcas]

Gene co-expression network

sample Hb_005565_010 Hb_005565_010 Hb_009355_030 Hb_009355_030 Hb_005565_010--Hb_009355_030 Hb_025306_010 Hb_025306_010 Hb_005565_010--Hb_025306_010 Hb_000340_010 Hb_000340_010 Hb_005565_010--Hb_000340_010 Hb_000987_130 Hb_000987_130 Hb_005565_010--Hb_000987_130 Hb_045046_010 Hb_045046_010 Hb_005565_010--Hb_045046_010 Hb_075449_020 Hb_075449_020 Hb_005565_010--Hb_075449_020 Hb_183510_010 Hb_183510_010 Hb_009355_030--Hb_183510_010 Hb_006588_090 Hb_006588_090 Hb_009355_030--Hb_006588_090 Hb_001247_230 Hb_001247_230 Hb_009355_030--Hb_001247_230 Hb_000174_200 Hb_000174_200 Hb_009355_030--Hb_000174_200 Hb_000116_570 Hb_000116_570 Hb_009355_030--Hb_000116_570 Hb_002002_020 Hb_002002_020 Hb_009355_030--Hb_002002_020 Hb_025306_010--Hb_075449_020 Hb_000390_220 Hb_000390_220 Hb_025306_010--Hb_000390_220 Hb_001662_030 Hb_001662_030 Hb_025306_010--Hb_001662_030 Hb_003906_190 Hb_003906_190 Hb_025306_010--Hb_003906_190 Hb_006346_040 Hb_006346_040 Hb_025306_010--Hb_006346_040 Hb_000540_120 Hb_000540_120 Hb_025306_010--Hb_000540_120 Hb_000465_310 Hb_000465_310 Hb_000340_010--Hb_000465_310 Hb_027380_160 Hb_027380_160 Hb_000340_010--Hb_027380_160 Hb_153150_010 Hb_153150_010 Hb_000340_010--Hb_153150_010 Hb_024399_010 Hb_024399_010 Hb_000340_010--Hb_024399_010 Hb_096962_020 Hb_096962_020 Hb_000340_010--Hb_096962_020 Hb_017987_070 Hb_017987_070 Hb_000340_010--Hb_017987_070 Hb_000987_130--Hb_025306_010 Hb_000987_130--Hb_075449_020 Hb_000987_130--Hb_001662_030 Hb_002928_160 Hb_002928_160 Hb_000987_130--Hb_002928_160 Hb_005000_300 Hb_005000_300 Hb_000987_130--Hb_005000_300 Hb_063100_010 Hb_063100_010 Hb_045046_010--Hb_063100_010 Hb_000336_140 Hb_000336_140 Hb_045046_010--Hb_000336_140 Hb_002977_010 Hb_002977_010 Hb_045046_010--Hb_002977_010 Hb_003878_140 Hb_003878_140 Hb_045046_010--Hb_003878_140 Hb_003126_030 Hb_003126_030 Hb_045046_010--Hb_003126_030 Hb_002849_080 Hb_002849_080 Hb_045046_010--Hb_002849_080 Hb_075449_020--Hb_001662_030 Hb_075449_020--Hb_000390_220 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.856406 0.895567 0.0918056 0.11729 0.38273 0.300318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.352129 0.138539 0.234282 0.0795224 0

CAGE analysis