Hb_005565_030

Information

Type -
Description -
Location Contig5565: 23412-26094
Sequence    

Annotation

kegg
ID rcu:RCOM_0522450
description hypothetical protein
nr
ID XP_012071033.1
description PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
swissprot
ID P38838
description DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1
trembl
ID A0A067L5D6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01051 PE=4 SV=1
Gene Ontology
ID GO:0008270
description dna-dependent metalloprotease wss1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48545: 23544-25914 , PASA_asmbl_48546: 23477-26081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005565_030 0.0 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
2 Hb_001818_080 0.1010221177 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
3 Hb_009158_030 0.1087786405 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
4 Hb_030312_040 0.1127059008 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
5 Hb_002111_030 0.1127780271 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
6 Hb_002263_010 0.121969113 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
7 Hb_015941_030 0.1274462097 - - unknown [Populus trichocarpa]
8 Hb_000798_060 0.1304139288 transcription factor TF Family: PHD -
9 Hb_000920_040 0.1312408398 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
10 Hb_002232_170 0.1319126455 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
11 Hb_004070_030 0.1322651171 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000997_060 0.1345419899 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
13 Hb_006452_030 0.1362918 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_084934_010 0.1374224228 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
15 Hb_000085_270 0.1380512556 - - PREDICTED: pirin-like protein [Malus domestica]
16 Hb_004055_010 0.1383018922 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_000442_100 0.1402838839 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
18 Hb_002475_160 0.1430818237 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
19 Hb_000258_410 0.143855545 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
20 Hb_000116_110 0.1448434787 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]

Gene co-expression network

sample Hb_005565_030 Hb_005565_030 Hb_001818_080 Hb_001818_080 Hb_005565_030--Hb_001818_080 Hb_009158_030 Hb_009158_030 Hb_005565_030--Hb_009158_030 Hb_030312_040 Hb_030312_040 Hb_005565_030--Hb_030312_040 Hb_002111_030 Hb_002111_030 Hb_005565_030--Hb_002111_030 Hb_002263_010 Hb_002263_010 Hb_005565_030--Hb_002263_010 Hb_015941_030 Hb_015941_030 Hb_005565_030--Hb_015941_030 Hb_001818_080--Hb_030312_040 Hb_061908_010 Hb_061908_010 Hb_001818_080--Hb_061908_010 Hb_002232_170 Hb_002232_170 Hb_001818_080--Hb_002232_170 Hb_004374_200 Hb_004374_200 Hb_001818_080--Hb_004374_200 Hb_001818_080--Hb_015941_030 Hb_005056_060 Hb_005056_060 Hb_009158_030--Hb_005056_060 Hb_009158_030--Hb_002232_170 Hb_000395_080 Hb_000395_080 Hb_009158_030--Hb_000395_080 Hb_004221_010 Hb_004221_010 Hb_009158_030--Hb_004221_010 Hb_004310_030 Hb_004310_030 Hb_009158_030--Hb_004310_030 Hb_006452_030 Hb_006452_030 Hb_030312_040--Hb_006452_030 Hb_000703_080 Hb_000703_080 Hb_030312_040--Hb_000703_080 Hb_030312_040--Hb_002263_010 Hb_003494_240 Hb_003494_240 Hb_030312_040--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_030312_040--Hb_000608_120 Hb_008725_250 Hb_008725_250 Hb_030312_040--Hb_008725_250 Hb_002475_160 Hb_002475_160 Hb_002111_030--Hb_002475_160 Hb_000300_280 Hb_000300_280 Hb_002111_030--Hb_000300_280 Hb_026099_010 Hb_026099_010 Hb_002111_030--Hb_026099_010 Hb_000645_150 Hb_000645_150 Hb_002111_030--Hb_000645_150 Hb_002942_160 Hb_002942_160 Hb_002111_030--Hb_002942_160 Hb_007317_190 Hb_007317_190 Hb_002111_030--Hb_007317_190 Hb_002263_010--Hb_006452_030 Hb_003086_020 Hb_003086_020 Hb_002263_010--Hb_003086_020 Hb_004242_100 Hb_004242_100 Hb_002263_010--Hb_004242_100 Hb_000152_140 Hb_000152_140 Hb_002263_010--Hb_000152_140 Hb_001454_140 Hb_001454_140 Hb_002263_010--Hb_001454_140 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_000808_040 Hb_000808_040 Hb_015941_030--Hb_000808_040 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_015941_030--Hb_002475_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.0126 52.5572 6.87726 17.1057 48.8042 115.258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.646 44.0648 23.2409 20.1484 8.75272

CAGE analysis