Hb_005565_040

Information

Type -
Description -
Location Contig5565: 26888-30192
Sequence    

Annotation

kegg
ID rcu:RCOM_0522430
description hypothetical protein
nr
ID XP_002522768.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9U9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0522430 PE=4 SV=1
Gene Ontology
ID GO:0009536
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005565_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012114_060 0.0878685375 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
3 Hb_000092_100 0.0885375301 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
4 Hb_001105_010 0.0931224635 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
5 Hb_029920_050 0.0955544387 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
6 Hb_000548_050 0.0977146675 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
7 Hb_011942_080 0.0990222497 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
8 Hb_007336_020 0.1004054557 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
9 Hb_006951_020 0.1007404332 - - Rop3 [Hevea brasiliensis]
10 Hb_141532_010 0.1018321623 - - PREDICTED: protein SMG9-like [Jatropha curcas]
11 Hb_033834_030 0.1057175742 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
12 Hb_000785_030 0.1062173789 - - hypothetical protein RCOM_0808030 [Ricinus communis]
13 Hb_007632_110 0.1096575691 - - chromatin regulatory protein sir2, putative [Ricinus communis]
14 Hb_001158_220 0.1096856517 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
15 Hb_009222_010 0.1099737679 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_001380_020 0.1125890973 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
17 Hb_003641_060 0.1130964048 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
18 Hb_003467_010 0.1132632304 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
19 Hb_008803_090 0.1138896258 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
20 Hb_000322_100 0.114419212 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]

Gene co-expression network

sample Hb_005565_040 Hb_005565_040 Hb_012114_060 Hb_012114_060 Hb_005565_040--Hb_012114_060 Hb_000092_100 Hb_000092_100 Hb_005565_040--Hb_000092_100 Hb_001105_010 Hb_001105_010 Hb_005565_040--Hb_001105_010 Hb_029920_050 Hb_029920_050 Hb_005565_040--Hb_029920_050 Hb_000548_050 Hb_000548_050 Hb_005565_040--Hb_000548_050 Hb_011942_080 Hb_011942_080 Hb_005565_040--Hb_011942_080 Hb_012114_060--Hb_000548_050 Hb_052764_050 Hb_052764_050 Hb_012114_060--Hb_052764_050 Hb_000394_190 Hb_000394_190 Hb_012114_060--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_012114_060--Hb_001168_040 Hb_000787_170 Hb_000787_170 Hb_012114_060--Hb_000787_170 Hb_002495_040 Hb_002495_040 Hb_000092_100--Hb_002495_040 Hb_000465_430 Hb_000465_430 Hb_000092_100--Hb_000465_430 Hb_001635_170 Hb_001635_170 Hb_000092_100--Hb_001635_170 Hb_001936_080 Hb_001936_080 Hb_000092_100--Hb_001936_080 Hb_096563_010 Hb_096563_010 Hb_000092_100--Hb_096563_010 Hb_003030_070 Hb_003030_070 Hb_000092_100--Hb_003030_070 Hb_007632_110 Hb_007632_110 Hb_001105_010--Hb_007632_110 Hb_135377_010 Hb_135377_010 Hb_001105_010--Hb_135377_010 Hb_003467_010 Hb_003467_010 Hb_001105_010--Hb_003467_010 Hb_006355_010 Hb_006355_010 Hb_001105_010--Hb_006355_010 Hb_009222_010 Hb_009222_010 Hb_001105_010--Hb_009222_010 Hb_000392_050 Hb_000392_050 Hb_001105_010--Hb_000392_050 Hb_029920_050--Hb_001635_170 Hb_033153_050 Hb_033153_050 Hb_029920_050--Hb_033153_050 Hb_008803_090 Hb_008803_090 Hb_029920_050--Hb_008803_090 Hb_007336_020 Hb_007336_020 Hb_029920_050--Hb_007336_020 Hb_000230_200 Hb_000230_200 Hb_029920_050--Hb_000230_200 Hb_033843_010 Hb_033843_010 Hb_029920_050--Hb_033843_010 Hb_000548_050--Hb_052764_050 Hb_012799_110 Hb_012799_110 Hb_000548_050--Hb_012799_110 Hb_000548_050--Hb_011942_080 Hb_000548_050--Hb_000394_190 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_011942_080--Hb_003467_010 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_011942_080--Hb_012799_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.27518 3.14305 2.86548 3.22546 3.15048 6.35512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05144 3.29179 1.62186 1.85454 0.937894

CAGE analysis