Hb_005565_060

Information

Type -
Description -
Location Contig5565: 34670-35799
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09550g
description POPTRDRAFT_568582; NLI interacting factor family protein
nr
ID XP_012071027.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 isoform X1 [Jatropha curcas]
swissprot
ID Q8VYE2
description Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1
trembl
ID A0A067KSW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01048 PE=4 SV=1
Gene Ontology
ID GO:0005744
description mitochondrial import inner membrane translocase subunit tim50-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 044_C03.ab1: 35551-36042 , 046_E11.ab1: 35426-36087

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005565_060 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 isoform X1 [Jatropha curcas]
2 Hb_019762_020 0.1846829594 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
3 Hb_001252_210 0.1885354602 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
4 Hb_003025_040 0.1898385882 - - PREDICTED: elongin-A [Jatropha curcas]
5 Hb_002221_070 0.1945130962 - - beta-glucanase, putative [Ricinus communis]
6 Hb_002518_210 0.1963486619 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
7 Hb_024758_010 0.196867439 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
8 Hb_054132_010 0.1975931936 - - PREDICTED: transmembrane protein 136-like isoform X2 [Pyrus x bretschneideri]
9 Hb_181385_010 0.1985059095 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
10 Hb_000983_040 0.2003055913 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
11 Hb_003497_040 0.2014258037 - - ATP binding protein, putative [Ricinus communis]
12 Hb_079483_020 0.2024738439 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Jatropha curcas]
13 Hb_001638_320 0.2036699769 - - hypothetical protein POPTR_0014s10150g [Populus trichocarpa]
14 Hb_001439_200 0.205078864 - - Transmembrane protein Tmp21 precursor, putative [Ricinus communis]
15 Hb_008749_040 0.2059512642 - - PREDICTED: formin-like protein 20 [Populus euphratica]
16 Hb_002260_150 0.2088597743 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
17 Hb_002735_050 0.2100944313 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
18 Hb_008790_030 0.2102615533 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
19 Hb_006153_030 0.2108170162 - - PREDICTED: probable transaldolase [Jatropha curcas]
20 Hb_000733_080 0.2120794629 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]

Gene co-expression network

sample Hb_005565_060 Hb_005565_060 Hb_019762_020 Hb_019762_020 Hb_005565_060--Hb_019762_020 Hb_001252_210 Hb_001252_210 Hb_005565_060--Hb_001252_210 Hb_003025_040 Hb_003025_040 Hb_005565_060--Hb_003025_040 Hb_002221_070 Hb_002221_070 Hb_005565_060--Hb_002221_070 Hb_002518_210 Hb_002518_210 Hb_005565_060--Hb_002518_210 Hb_024758_010 Hb_024758_010 Hb_005565_060--Hb_024758_010 Hb_002411_040 Hb_002411_040 Hb_019762_020--Hb_002411_040 Hb_026314_020 Hb_026314_020 Hb_019762_020--Hb_026314_020 Hb_017413_010 Hb_017413_010 Hb_019762_020--Hb_017413_010 Hb_019762_020--Hb_003025_040 Hb_005278_020 Hb_005278_020 Hb_019762_020--Hb_005278_020 Hb_004784_020 Hb_004784_020 Hb_019762_020--Hb_004784_020 Hb_002284_230 Hb_002284_230 Hb_001252_210--Hb_002284_230 Hb_000574_130 Hb_000574_130 Hb_001252_210--Hb_000574_130 Hb_003894_080 Hb_003894_080 Hb_001252_210--Hb_003894_080 Hb_000046_350 Hb_000046_350 Hb_001252_210--Hb_000046_350 Hb_000733_080 Hb_000733_080 Hb_001252_210--Hb_000733_080 Hb_001252_210--Hb_019762_020 Hb_003025_040--Hb_017413_010 Hb_000789_230 Hb_000789_230 Hb_003025_040--Hb_000789_230 Hb_087749_010 Hb_087749_010 Hb_003025_040--Hb_087749_010 Hb_000373_120 Hb_000373_120 Hb_003025_040--Hb_000373_120 Hb_006846_060 Hb_006846_060 Hb_003025_040--Hb_006846_060 Hb_010883_050 Hb_010883_050 Hb_002221_070--Hb_010883_050 Hb_011360_070 Hb_011360_070 Hb_002221_070--Hb_011360_070 Hb_007009_010 Hb_007009_010 Hb_002221_070--Hb_007009_010 Hb_007904_260 Hb_007904_260 Hb_002221_070--Hb_007904_260 Hb_001439_200 Hb_001439_200 Hb_002221_070--Hb_001439_200 Hb_161175_010 Hb_161175_010 Hb_002221_070--Hb_161175_010 Hb_000768_210 Hb_000768_210 Hb_002518_210--Hb_000768_210 Hb_001189_070 Hb_001189_070 Hb_002518_210--Hb_001189_070 Hb_008841_020 Hb_008841_020 Hb_002518_210--Hb_008841_020 Hb_003633_030 Hb_003633_030 Hb_002518_210--Hb_003633_030 Hb_000141_080 Hb_000141_080 Hb_002518_210--Hb_000141_080 Hb_001366_370 Hb_001366_370 Hb_002518_210--Hb_001366_370 Hb_001284_030 Hb_001284_030 Hb_024758_010--Hb_001284_030 Hb_024758_010--Hb_000046_350 Hb_024758_010--Hb_001252_210 Hb_001353_010 Hb_001353_010 Hb_024758_010--Hb_001353_010 Hb_002878_010 Hb_002878_010 Hb_024758_010--Hb_002878_010 Hb_001301_050 Hb_001301_050 Hb_024758_010--Hb_001301_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.58872 0.346661 0.154476 5.47766 1.75378 2.04459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42121 5.06002 1.39912 1.72902 3.53367

CAGE analysis